Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0387 ATGGATCCGGCGACTACGCCTCTGGGACAAATGCTATTGGAGGAGATCACTCCGGTGGTGATGGTCCTTTCAACTCCTTCCGTCGAAGAAGCATGCCTCAAGAACGGCCTCTCCTTCCTTCAGATGCTCACGCCATTCTGCTCCTTCAACAACATCGACGTTCCTGTTAGGACGGCCAGTGACCAACCCTATCGCCTTCACAAGTTCAAATTGCGTTTGTTTTATGCTTCCGATGTTAGGAAGCCCGATTTGAAGGTAGCTAAAGAGAAATTGAAGCAAGTTATCGCAGAGGCAGGGGAGAAAGTTCTTTCCGAGTCTTGTTCGGATGTGCCAGAAAGTAATCATGAACTTGAGAGTTCTGAACATGGAAATACACCATCCTGGTTTCAGTTTCTCAATGAAGAGCTTGTTCGTATGGCTTCCTTTTCAGATCATGAAGCTTTTGACCATCCTGTGGCATGTCTTCTAGCTGTTTCTTCAAAGGATGAGCAGCCTATTAACAGATTTGTTGATCTTTTTAATACCAACAAGGTTCCTTCCCTTCTTAATGATGGTGCAATGGATCCAAAGATTTTAAAGCATTACTTGTTAGTGCATGATAATCAAGATGGCCCTGTAGACAGCAGGGCAAGTAAAATATTGACAGAAATGAGGAGTACATTTGGTACAAGTGACTGTTTGTTGCTTTGCATTAATTCCTCCCTGGATGCTCCAATCAAACATCAAGATAATCCTTGGGCTTCATATATAACTGATGCCTCACCTAGTCAAGATCTTGGTTGCTTTCTTAAAATTGACGACATCAATGAGATCAAAGATCTAATGCAAGATTTATCATCTAAGCACATCATTCCAAATATGGAGCAAAAGATCCGTGTACTCAATCAACAGGTTTCTGCAACGCGAAAGGGGTTTAGAAACCAAATAAAAAATTTATGGTGGAGAAAAGGGAAAGAAGATGGTGCAGATTCTCTCAATGGTCCTACGTATAACTTTAATTCCATTGAATCCCAGATTCGAGTTTTGGGTGATTATGCTTTCATGTTACGAGATTATGAACTTGCGTTGTCAAATTATCGCTTAATTTCCACAGATTACAAGATTGATAAGGCCTGGAAGCGTTATGCTGGTGTGCAGGAAATGATGGGACTTACGTACTTCATGTTGGATCAATCAAGAAAGGAAGCTGAGTATTGCATGGAAAATGCTTTTAACACATATTTAAAACTTGGATCATCAGGCGAGCAAAATGCAACACGATGTGGTTTGTGGTGGATAGAAATGTTGAAGGCACGTGATCAACATAAGGAGGCAGCTACTGTTTATTTTCGTATTTGTGGTGAGGATATCCTGCATTCTGCTGTGATGCTTGAACAAGCATCATACTGCTACTTGCTGTCTAAACCCTCCATGTTACGCAAATATGGATTTCATCTGGTGCTTTCTGGGGAGCAGTATAAAAAGTGTGATCAGATTAAGCATGCGATTCGAACATACAGAAGTGCTCTATCTGTTTTTGGAGGAACTACTTGGAGTTATATCAATGATCATGTTCATTTTCATATAGGACAGTGGTATGCTTCTCTTGGGATGTATGATGTGGCTGTCAAGCATATGATGGAAATCTTGGCCTGTAGTCACCAGTCCAAGACAACACAGGAATTATTCCTGGGTGATGTTCTTCAAATTGTGGAGAAAACTGGACGAACTTTTGAGGTAACAAAACTTCAATTGCCTGTAATTAACATCTCGTCACTCAAGGTCATCTTTGAAGATTACCGAACTTTTGGATCTTCTTCAGCTGCTAATGTTAGAGAAGGCTTGTGGCATTCTTTGGAGGAAGAAATGATACCGTCATTCTCTGCTGCCAAGACTAATTGGTTGGAGTTGCAATCAAAGCTTATCTCAAAAAAACACAATCAGTCAAATGTTTGTGTTGCAGGCGAAGCTGTGAAGGTGAATATTGAATTCAAAAATCCTCTGCAAATCTCAATTCCCATATCTGGTGTTACACTCATATGCAAGTATTCTGCTAGTACTGATGAAGTTAGACCAGTTGAAAATGTTTCAAGTGTGGAGAATAATGAGATTGACCACTTCAGGGATATGAACTCAGACAACTCTTCATATTTGGTGTCTGGGGTTGATTTCTTACTAGGAGGGGGTGAAACAACCATGATTCAACTATCAGTTACTCCCACGGCAGAAGGTACTCTTGAAATTCTTGGTGTTAGGTGGAAACTGTCAGGTACAATAGTTGGCTTTCACAACTTTGAGCTGAATCACCCAAAGAAGAATATTGTGAAAGGAGGAAGGAAAGCAAAATACTTGCCAAATGAAAAATTTAAATTTACAGTGATTAAGAGCATACCCAAGCTTCAGGGTTCCATTCACCCTTTCCCTGGAAAGGCCTATGCTGGAGATTTACAGCAGCTTGTTTTGGAGTTGAGGAATCCATCAGAGTTTCCTGTTAAGAATCTGAAGCTGAAGATAAGTCATCCTAGATTCCTGATTATTGGGAATAAGGAAACTATGAAGTCAGGGTTTCCTGCTTGCTTAACAAAGAAGTCAGATTCAGTACAAAGTGATGCACATGCTAATTCTAATCTCATGTCTGACACAGTCTTTTTGTTTCCAGAAGGCACTTCAGTTCAAGGGGAAACACCGTTCTTGTGGCCTCTATGGTTTAGAGCTGCTGTTCCAGGTGATATATCACTTTACATGAGCATATATTATGAGATGGGAGATATATCAAGTGTAATCAGATATCGCACTCTTCGCTTGCATTACAATGTGCAGGTATTACCATCATTGGATGTCTCGTTTCAAATTAGTCCTTCTCAATTAAGATTACAAGAGTTTCTTGTTAAATTGGATGTTGTTAACAAGACTAGCTCAGAAAGTTTCCAAGTTTATCAGCTATCATCTGTTGGGCACCACTGGGAAATCTCATTACTTCAACCTCCTGATGCTATTTTTCCTTCCCAATCATTGATGGCTGGTCAAGCAATATCATGTTTTTTTACACTAAAGAACTCAAGGTTTTCAACATTGGAGGACAATGTATCTACATTGCCTATCAGAAGTGACGTAAAGTTGGTTTCCCAAAGCAGTGAGGATTTAGTTTATGACATAAACTCTGCACCTTTAGTCAATTTCCACCATTGTGAAAGATCGCAACAGGAAGTGTCACATGAGGGTGACTTAAATACTGTGGATTTTATATTGTTCTCTCGGCTTCTGAAGAGTAAGAACAATCCTGGTTTATCTGATCCTCCTCGTGTTATGTCTCATCATGCATGCCACTTCAGCACTGCTAGCACCGGCCCTATTTCATGGCTAGTGGATGGACCTCAAACCTTGCATCATGATTTCTCTGCATCGTTCTGTGAAATAAATCTGAAGATGCACCTTTACAATTCATCTGGTGGCATTGCTTTTGTGCGCATTAACACCTTAGATTCTGCTGGTAATGGTGGACATATGAACAGTGTAACTGTGGCTCCTGATAACCAAGCAGGGTGGCATGATATAACCCCAGGGAATGAACAAAAAGTCGCATCAAATGTTATTGAAACGCAATCAGGAAAGGCATTATCATTAGAAAGTGTCTCCCCATATATTTGGTGTGGATCAAGCTCAACCAACCTCCACATTGAGCCTATGTCTTCGGCAGAAATTCCTCTTCAGATATGTGTATTCTCTCCTGGGACATACGACCTGTCAAATTATGTTTTGAATTGGAAACTTCCATCTGATGGTCAGAGAGACAGTGATGAAACGAGACAGCGTTCAGGCAAGTGCCAAGGTTATAAATACTATCTTACTGTGCTCCAGTCCGCTTGA 3846 0.4056 MDPATTPLGQMLLEEITPVVMVLSTPSVEEACLKNGLSFLQMLTPFCSFNNIDVPVRTASDQPYRLHKFKLRLFYASDVRKPDLKVAKEKLKQVIAEAGEKVLSESCSDVPESNHELESSEHGNTPSWFQFLNEELVRMASFSDHEAFDHPVACLLAVSSKDEQPINRFVDLFNTNKVPSLLNDGAMDPKILKHYLLVHDNQDGPVDSRASKILTEMRSTFGTSDCLLLCINSSLDAPIKHQDNPWASYITDASPSQDLGCFLKIDDINEIKDLMQDLSSKHIIPNMEQKIRVLNQQVSATRKGFRNQIKNLWWRKGKEDGADSLNGPTYNFNSIESQIRVLGDYAFMLRDYELALSNYRLISTDYKIDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFNTYLKLGSSGEQNATRCGLWWIEMLKARDQHKEAATVYFRICGEDILHSAVMLEQASYCYLLSKPSMLRKYGFHLVLSGEQYKKCDQIKHAIRTYRSALSVFGGTTWSYINDHVHFHIGQWYASLGMYDVAVKHMMEILACSHQSKTTQELFLGDVLQIVEKTGRTFEVTKLQLPVINISSLKVIFEDYRTFGSSSAANVREGLWHSLEEEMIPSFSAAKTNWLELQSKLISKKHNQSNVCVAGEAVKVNIEFKNPLQISIPISGVTLICKYSASTDEVRPVENVSSVENNEIDHFRDMNSDNSSYLVSGVDFLLGGGETTMIQLSVTPTAEGTLEILGVRWKLSGTIVGFHNFELNHPKKNIVKGGRKAKYLPNEKFKFTVIKSIPKLQGSIHPFPGKAYAGDLQQLVLELRNPSEFPVKNLKLKISHPRFLIIGNKETMKSGFPACLTKKSDSVQSDAHANSNLMSDTVFLFPEGTSVQGETPFLWPLWFRAAVPGDISLYMSIYYEMGDISSVIRYRTLRLHYNVQVLPSLDVSFQISPSQLRLQEFLVKLDVVNKTSSESFQVYQLSSVGHHWEISLLQPPDAIFPSQSLMAGQAISCFFTLKNSRFSTLEDNVSTLPIRSDVKLVSQSSEDLVYDINSAPLVNFHHCERSQQEVSHEGDLNTVDFILFSRLLKSKNNPGLSDPPRVMSHHACHFSTASTGPISWLVDGPQTLHHDFSASFCEINLKMHLYNSSGGIAFVRINTLDSAGNGGHMNSVTVAPDNQAGWHDITPGNEQKVASNVIETQSGKALSLESVSPYIWCGSSSTNLHIEPMSSAEIPLQICVFSPGTYDLSNYVLNWKLPSDGQRDSDETRQRSGKCQGYKYYLTVLQSA* 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0387 1281 Pfam ER-Golgi trafficking TRAPP I complex 85 kDa subunit 168 519 IPR024420 -
Apr4g0387 1281 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 637 829 IPR013935 -
Apr4g0387 1281 Gene3D Tetratricopeptide repeat domain 329 555 IPR011990 GO:0005515
Apr4g0387 1281 SUPERFAMILY TPR-like 431 551 IPR011990 GO:0005515
Apr4g0387 1281 PANTHER TRANSPORT PROTEIN TRAPP 8 1280 IPR024420 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0387 K20305 - gmx:100809666 2268.81