Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0359 ATGGCTTCAATTACCAAAAGGCTTGAAGGAAAAGTAGCAATAATCACAGGTGGAGCTAGTGGCATCGGTGCTGCTACCGCTAAACTATTCGCTCAACACGGTGCTAAAGTAATCATTGCAGATGTGCAAGACGATTTAGGAAACTTGCTTTGCAAAAGCCTTGGCACAAACACCACCATTCTCTACGTTCACTGCGATGTAACACGTGACTCAGATGTCAAAAACGTGGTTGATATTGCAGTGTCCAAATACGGCAAACTTGACATCATGTACAACAACGCTGGCATAGCTGGAGACTCAAATCGATCAATACTTGCTTCCGACAACGAAACATTCAAAAGGGTTTTCGAAGTTAACGTTTATGGAGCTTTCTTGGGTGCCAAGCATGCTGCAAAGTTCATGATCCCGGCAAAAAGAGGGGTCATTCTTTTTACTTCAAGTGTTGCTTCAATACTTGGTGGCGAAACAACACACGCTTACACGGTGTCAAAGCACGCAGTGTTGGGGCTTATGAAGAATTTATGCGTGGAAATGGGGCAGTATGGGATTAGAGTAAATTGCATTTGCCCTGGTGGCATTCCCACTCCAATGCTAAACAACGCATTGAAGATGAACAAGAAGGAAACACAGGAAATGTTATCTTCCGTTGCAGTGTTAAAAGGTGCAGTTCTTGAGGTTGAGGACATAGCAAGTGCAGCGCTTTATTTGAGTAGCGACGAGGCCAAGTACGTTAATGGAGTCAACTTTGTATTGGACGGAGGTTATAGCACCACCAATTTGTCATTCACTTCTGCACTGAATGGTCTCAAGATGAATAACCACACCGCCAACCACATTGATCAGTATTAG 849 0.4382 MASITKRLEGKVAIITGGASGIGAATAKLFAQHGAKVIIADVQDDLGNLLCKSLGTNTTILYVHCDVTRDSDVKNVVDIAVSKYGKLDIMYNNAGIAGDSNRSILASDNETFKRVFEVNVYGAFLGAKHAAKFMIPAKRGVILFTSSVASILGGETTHAYTVSKHAVLGLMKNLCVEMGQYGIRVNCICPGGIPTPMLNNALKMNKKETQEMLSSVAVLKGAVLEVEDIASAALYLSSDEAKYVNGVNFVLDGGYSTTNLSFTSALNGLKMNNHTANHIDQY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0359 282 Gene3D - 2 270 - -
Apr4g0359 282 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Apr4g0359 282 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Apr4g0359 282 PRINTS Glucose/ribitol dehydrogenase family signature 134 150 IPR002347 -
Apr4g0359 282 PRINTS Glucose/ribitol dehydrogenase family signature 160 179 IPR002347 -
Apr4g0359 282 PRINTS Glucose/ribitol dehydrogenase family signature 181 198 IPR002347 -
Apr4g0359 282 PRINTS Glucose/ribitol dehydrogenase family signature 219 239 IPR002347 -
Apr4g0359 282 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 2 266 - -
Apr4g0359 282 Pfam Enoyl-(Acyl carrier protein) reductase 17 256 - -
Apr4g0359 282 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Apr4g0359 282 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 IPR002347 -
Apr4g0359 282 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 IPR002347 -
Apr4g0359 282 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-RELATED 2 266 - -
Apr4g0359 282 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 257 IPR036291 -
Apr4g0359 282 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 147 175 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0359 Apr-Chr4 3049209 3050305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0359 7 266 Acyl Lipid Metabolism Gene Families AT3G55290 30.337 2.59e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0359 - - aprc:113863381 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0359 4 3049209 3050305 Apr4g0359 4 3049209 3050305 ECH