Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0358 ATGAATCGATCCTCCCACCCCTTTCCTTTTTTCTCCGAGGTCATATCAATGGCAACTTCGATCTCTGCACTCAACAGAAGGCTTGAAGGAAAAGTGGCGTTAATAACGGGTGGAGCAAGTGGAATTGGCAAACGCACTGCAGAAGTATTCGCTGAGCATGGAGCTAAAGTAGTGATCGCAGACATTCAAGACGAATTAGGACATTCTGTTGCTCAATCCATAGGTTCATCGACATGTTTATATGTTCATTGCGATGTTACTGATGAGAACCAAGTCAAAAGTGCCGTCGACAAAGCCGTTGAAACTTATGGGAAGCTAGACATCATGTTCAACAATGCTGGCATAGCTGATCCCAATAAGTCTCGAATCATTGACAATGATAAGGCAGATTTCGAGCGTGTACTTAGCGTCAATGTCACAGGTGTTTTCCTCGGCATAAAGCACGCGGCGCAAGCCATGATCCCAGCTCGTAGTGGTAGCATTATCTCTACGGCTAGCATAAGCTCTTACCTTGGTGGTGCTGCCTCACATGCTTATTGTTGTGCTAAGCATGCTGTGGTTGGCCTAACTAAAAATGCAGCGGTTGAACTTGGACAATTCGGGATAAGGGTCAATTGCTTGTCACCTTATTGTCTTGCTACTCCCTTGGCCACCAAGTTCGTTGGAGCTACGGACGAGGATCTTGAAAATGTCATGAACTCCCTCGCTAATCTCAAAGGTGTCACCCTTAAAGCTGACGATGTGGCTAATGCTGCACTTTATTTTGCTAGTGATGATTCAAGGTACGTCAGTGGCCATAATCTGCTCATAGACGGAGGCTTCAGCATTGTTAATCCCTCGTTCCATATGTTTCAGTACCCACAGTCTTGA 870 0.4563 MNRSSHPFPFFSEVISMATSISALNRRLEGKVALITGGASGIGKRTAEVFAEHGAKVVIADIQDELGHSVAQSIGSSTCLYVHCDVTDENQVKSAVDKAVETYGKLDIMFNNAGIADPNKSRIIDNDKADFERVLSVNVTGVFLGIKHAAQAMIPARSGSIISTASISSYLGGAASHAYCCAKHAVVGLTKNAAVELGQFGIRVNCLSPYCLATPLATKFVGATDEDLENVMNSLANLKGVTLKADDVANAALYFASDDSRYVSGHNLLIDGGFSIVNPSFHMFQYPQS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0358 289 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 21 286 - -
Apr4g0358 289 Pfam Enoyl-(Acyl carrier protein) reductase 37 275 - -
Apr4g0358 289 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 166 194 IPR020904 GO:0016491
Apr4g0358 289 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Apr4g0358 289 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Apr4g0358 289 PRINTS Glucose/ribitol dehydrogenase family signature 153 169 IPR002347 -
Apr4g0358 289 PRINTS Glucose/ribitol dehydrogenase family signature 179 198 IPR002347 -
Apr4g0358 289 PRINTS Glucose/ribitol dehydrogenase family signature 200 217 IPR002347 -
Apr4g0358 289 PRINTS Glucose/ribitol dehydrogenase family signature 238 258 IPR002347 -
Apr4g0358 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Apr4g0358 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 167 IPR002347 -
Apr4g0358 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 198 IPR002347 -
Apr4g0358 289 Gene3D - 18 285 - -
Apr4g0358 289 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 21 286 - -
Apr4g0358 289 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 277 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0358 Apr-Chr4 3041937 3044112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0358 28 284 Acyl Lipid Metabolism Gene Families AT1G63380 30.827 1.06e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0358 - - gmx:100802915 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0358 4 3041937 3044112 Apr4g0358 4 3041937 3044112 ECH