Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0346 ATGCAAAGCCCTACAAAGACTAAACAAGGCGTCCACACCTATGTTGCTCAGTGGCCTATTTCCACTCTAGCATGGTCAATGCGCCGTGACAAAACCCCCCGCTTTGCCATTGGTAGCTATTTGGAAGATTATACCAACAAGGTTGAACTTGTCCACTTCAACTACAACACATTCAGTTTTACCACCGACCCTCGTTTGGTACTTGATCACCCTTATGCACCAACAAACATCATGTTCTTTCCTTCCGAGGATGACACAAAACCAGACCTCCTTGCCACTTCAGGTGACAACCTAAGATTGTGGGAAATCCATGATGATCATATTCAACTAAAGTCCCCCCTAATTGGTAACAAAGTTAGTGATCATTCAGCTATAACCTCTTTTGATTGGACCATGTTTGACCCTCGTCTTATAGCAACTTCTAGCGTAGACACTACATGCACCATTTGGGACATTGAAAGGGAAGTTATGAAGGCACAACTAGTGGCACATGACAAAGAAGTATATGACATTTCATGGGGTGGACTTAATGTCTTTGCTTCTGTGTCTGGTGATGGTTCTATCAGGGTGTTTGATTTAAGAGACAAAGAAAAATCTACCATAATTTATGAAAATCCAGTGCAAGATTGTCCTTTGCTACGTTTGGAATGGAATAAAAGTGATCCAAGGTTCATGGCCATGGTTGGATTGAATAGTAATAAAGTGGTAATCATGGATATTAGGCTACCAACCACGCCATTTATGGAATTAAGTAAGCATAGAGCATGTGTTAATGCTATATCATGGTCTCCAAATTTTGGACGACATTTGTGCTCTGTTAGTGATGATGCAAGGGCCTTCATTTGGGATGTGATGGACTCAGGGATCCCAGCAAGAAATGACAATGATGTGGAGCCCTTGATGTGGCATGGAACAACATCTGAAATCAATCATGTGCGTTGGTCTCCAGTGCAGATGGATTGGATTGCTGTTGCTTTCTTGAACAACTTACAATTACTCAAGGTGTAG 1008 0.4187 MQSPTKTKQGVHTYVAQWPISTLAWSMRRDKTPRFAIGSYLEDYTNKVELVHFNYNTFSFTTDPRLVLDHPYAPTNIMFFPSEDDTKPDLLATSGDNLRLWEIHDDHIQLKSPLIGNKVSDHSAITSFDWTMFDPRLIATSSVDTTCTIWDIEREVMKAQLVAHDKEVYDISWGGLNVFASVSGDGSIRVFDLRDKEKSTIIYENPVQDCPLLRLEWNKSDPRFMAMVGLNSNKVVIMDIRLPTTPFMELSKHRACVNAISWSPNFGRHLCSVSDDARAFIWDVMDSGIPARNDNDVEPLMWHGTTSEINHVRWSPVQMDWIAVAFLNNLQLLKV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0346 335 PANTHER WD REPEAT CONTAINING PROTEIN 1 335 IPR045159 -
Apr4g0346 335 Pfam WD domain, G-beta repeat 120 151 IPR001680 GO:0005515
Apr4g0346 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 161 201 IPR001680 GO:0005515
Apr4g0346 335 PANTHER WD REPEAT-CONTAINING PROTEIN LWD1-LIKE 1 335 - -
Apr4g0346 335 SMART WD40_4 295 334 IPR001680 GO:0005515
Apr4g0346 335 SMART WD40_4 154 192 IPR001680 GO:0005515
Apr4g0346 335 SMART WD40_4 243 283 IPR001680 GO:0005515
Apr4g0346 335 SMART WD40_4 61 102 IPR001680 GO:0005515
Apr4g0346 335 SMART WD40_4 112 151 IPR001680 GO:0005515
Apr4g0346 335 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Apr4g0346 335 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 284 - -
Apr4g0346 335 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 284 IPR001680 GO:0005515
Apr4g0346 335 Gene3D - 8 332 IPR015943 GO:0005515
Apr4g0346 335 SUPERFAMILY WD40 repeat-like 11 327 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0346 Apr-Chr4 2958797 2959804 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0346 K11805 - qsu:111996771 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0346 4 2958797 2959804 Apr4g0346 4 2958797 2959804 ECH