Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0340 ATGTACTACAATGGATACTACCATTTGTTCTACCAGTATAACCCCGAAGGCTCTGTGTGGGGTAACATTGTATGGGCCCACTCAGTATCAAAGGATCTTATCAATTGGAAAGCACTTGAACCCGCAATTTACCCATCTAAACCATTTGACAAGTTCGGGTGTTGGTCCGGGTCAGCCACCATTGTGCCGGGTAAGGGACCCGTGATCCTATATACGGGAATTGTTGACGAGAATAACACTCAAGTGCAATGCTATGCCATACCCGAAAATGCATCCGACCCGTTTCTTCAAAGATGGGTGAAACCCGATGAATTCAACCCGATTATTGTGGCGGGTAAAGCCGTAAACGGCAGTGCGTTCCGTGATCCAACAACTGCTTGGTGGAGCGAAGATGGGCATTGGAGGATATTGGTAGGTAGTAGAAGGAAACATAGAGGGATGGCTTATTTGTATAGGAGCAAAGATTTTATGACATGGGTTCGGGCCAAACACCCGATCCATTCCAAGAGCACAACGGGTATGTGGGAGTGTCCCGATTTTTACCCAATTGCAATAGGAGGGCAAGAGGGGTTGGATACATCGGTTGAAGGGAATCATGTTAAGCACGTGCTAAAGAATAGTCTTGATATGACTAGGTTTGAGTACTATACATTAGGAACTTATTCTCCTGAAGAAGATAAGTATATCCCGGATAACACTTCAGTGGATGGTTGGGGTGGCCTTAGGTATGATTATGGCAATTTTTATGCTTCTAAGTCATTTTTTGACTCCAGCAAGAAACGAAGGGTCTTGTGGGGTTGGGCAAACGAGTCTGATTCCAAGGAGGACGATGTTCGCAAAGGATGGGCAGGAATTCAGGCGATTCCGCGCACCTTGTGGCTCGACTCAAATGGGAGACAACTGGTACAATGGCCTGTTGAAGAATTAGATAGCCTTAGAGAGAAAGAGGTTAAAATGAACAGTGAAAAGCTTGAACTGGGAAATTATGTTGAAGTCAAAGGAATCACTGCTGCCCAGGCAGATGTAGAAGTTACTTTCTCATTTTCAAGCTTGGATAAAGCAGAAGCTTTTGATCCGAAGTGGGTAAATGCACAGGATCTATGTGCCCAAAAGGGTTCCAAAGTTCAAGGTGGGGTTGGACCATTTGGGCTTCTAACTTTGGCTTCTGAAAAATTGGAGGAGTTCACTCCTGTGTTCTTCAGAATTTTCAAAGCTTCAAACAATCACGTGGTTCTCTTATGCTCAGATGCCAGAAGTTCTTCTCTGAAGAGTCATTTGTACAAGCCTTCATTTGCTGGCTTTGTAGACGTGGATTTAGATACTAAGAAACTTTCTCTTAGGAGTTTGATTGATCACTCAGTAGTGGAGAGTTTTGGAGCAGGAGGGAAAACAAATATTCTGTCTAGGGTTTATCCAGAGCTAGCGGTGAAGGATCAAGCCCACTTATTTGTGTTCAACAACGGTACTGAGCCAATCACCGTAGAAAACCTCAGAGCATGGAGCATGAAAACAGCTGATATAAATTGA 1527 0.4414 MYYNGYYHLFYQYNPEGSVWGNIVWAHSVSKDLINWKALEPAIYPSKPFDKFGCWSGSATIVPGKGPVILYTGIVDENNTQVQCYAIPENASDPFLQRWVKPDEFNPIIVAGKAVNGSAFRDPTTAWWSEDGHWRILVGSRRKHRGMAYLYRSKDFMTWVRAKHPIHSKSTTGMWECPDFYPIAIGGQEGLDTSVEGNHVKHVLKNSLDMTRFEYYTLGTYSPEEDKYIPDNTSVDGWGGLRYDYGNFYASKSFFDSSKKRRVLWGWANESDSKEDDVRKGWAGIQAIPRTLWLDSNGRQLVQWPVEELDSLREKEVKMNSEKLELGNYVEVKGITAAQADVEVTFSFSSLDKAEAFDPKWVNAQDLCAQKGSKVQGGVGPFGLLTLASEKLEEFTPVFFRIFKASNNHVVLLCSDARSSSLKSHLYKPSFAGFVDVDLDTKKLSLRSLIDHSVVESFGAGGKTNILSRVYPELAVKDQAHLFVFNNGTEPITVENLRAWSMKTADIN* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0340 508 CDD GH32_Fruct1-like 1 294 - -
Apr4g0340 508 Pfam Glycosyl hydrolases family 32 C terminal 308 501 IPR013189 -
Apr4g0340 508 SUPERFAMILY Arabinanase/levansucrase/invertase 1 306 IPR023296 -
Apr4g0340 508 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE PROTEIN 1 507 - -
Apr4g0340 508 SMART glyco_32 1 462 IPR001362 GO:0004553|GO:0005975
Apr4g0340 508 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 305 IPR013148 -
Apr4g0340 508 SUPERFAMILY Concanavalin A-like lectins/glucanases 305 504 IPR013320 -
Apr4g0340 508 Gene3D - 319 502 - -
Apr4g0340 508 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 1 507 - -
Apr4g0340 508 Gene3D Glycosyl hydrolase domain; family 43 1 318 IPR023296 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0340 Apr-Chr4 2921592 2923879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0340 1 502 Glycoside Hydrolase AT2G36190 64.591 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0340 K01193 - gmx:100777418 907.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0340 4 2921592 2923879 Apr4g0340 4 2921592 2923879 ECH