Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0284 ATGGCGGAGCATTTGGCATCGATATTCGGAACGGAGAAGGACAGGGTTAACTGTCCCTTCTACTTCAAGATCGGCGCGTGCAGGCACGGTGACCGTTGTTCAAGGCTTCACACAAAGCCCACAATTAGCCCAACTCTGGTTCTCTCCAACATGTACCAGAGGCCCGACATGAACATCAACATCATCACAAACCCTAATCAACCTCAACCCCAATCCCAATCCCTCGACCCCGACAAGGTCCAGGATCACTTCGACGACTTCTACGAAGATCTCTTCGAGGAGCTCAGCAAGTACGGCCCAATTCAGAGCTTGAATATTTGCGATAATTTGGCCGATCACATGGTTGGAAATGTGTATGTTCAGTTTAGAGAGGAGGATCATGCTGCCAATGCGCTCATGAATCTCACTGGAAGATTTTATTCAGGTCGACCCATCATTGCCGACTTCTCACCTGTTACGGATTTTCGAGAAGCCACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTTATGCACCTAAAGAAGATTAGCAGGGATTTGAGAAGGCGATTATTTGGAAGAAATAGGAGATGGAATGGCCGCAGTGGAAGCAGAAGCAGGAGCCCACCAAGGAATCGCAACCATGAGGAGCGTTCACATTCTGGTCGTAATTCTGGGAGAAGAGATTTTGACAGGTCTCGTGGACACCATGGTAAGAGGCCTAGAAGCCGAAGTCCTCGATATAGAGGAAAACGAAGTAGAAGTCCGGCTGGCAGGGATAGAAGCCCCATCAGAGAAAGTAGTGTAGAAAGGAGAGCTAAAATAGAGCAATGGAACAGGGAGAAGGAACTAGGGGACTCTGGTAACAATAACAGCACAAAAAGCAATGATTCTCAAGAGCAGGGTGTTGCACCAAATGGCAGTGAATCTGATAACCATCAGATATAG 945 0.4762 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNINIITNPNQPQPQSQSLDPDKVQDHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRRLFGRNRRWNGRSGSRSRSPPRNRNHEERSHSGRNSGRRDFDRSRGHHGKRPRSRSPRYRGKRSRSPAGRDRSPIRESSVERRAKIEQWNREKELGDSGNNNSTKSNDSQEQGVAPNGSESDNHQI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0284 314 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 305 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 MobiDBLite consensus disorder prediction 208 231 - -
Apr4g0284 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 145 IPR000504 GO:0003723
Apr4g0284 314 MobiDBLite consensus disorder prediction 252 282 - -
Apr4g0284 314 PANTHER RNA RECOGNITION MOTIF DOMAIN, EUKARYOTE-RELATED 1 305 - -
Apr4g0284 314 CDD RRM_U2AF35B 44 151 - -
Apr4g0284 314 MobiDBLite consensus disorder prediction 196 314 - -
Apr4g0284 314 ProSiteProfiles Zinc finger C3H1-type profile. 154 181 IPR000571 GO:0046872
Apr4g0284 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 152 IPR000504 GO:0003723
Apr4g0284 314 MobiDBLite consensus disorder prediction 283 314 - -
Apr4g0284 314 Gene3D - 43 151 IPR012677 -
Apr4g0284 314 SUPERFAMILY RNA-binding domain, RBD 83 155 IPR035979 GO:0003676
Apr4g0284 314 MobiDBLite consensus disorder prediction 232 251 - -
Apr4g0284 314 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Apr4g0284 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Apr4g0284 314 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 179 IPR000571 GO:0046872
Apr4g0284 314 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 PRINTS U2 auxiliary factor small subunit signature 81 96 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 PRINTS U2 auxiliary factor small subunit signature 109 131 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 PRINTS U2 auxiliary factor small subunit signature 136 160 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 PRINTS U2 auxiliary factor small subunit signature 171 183 IPR009145 GO:0000398|GO:0003723|GO:0089701
Apr4g0284 314 SMART rrm2_1 73 148 IPR003954 GO:0003676
Apr4g0284 314 SMART c3hfinal6 154 180 IPR000571 GO:0046872
Apr4g0284 314 SMART c3hfinal6 13 39 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0284 Apr-Chr4 2362003 2364678 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0284 K12836 - gmx:100811622 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0284 4 2362003 2364678 Apr4g0284 4 2362003 2364678 ECH