Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0281 ATGTGGTTGGGAAGACACTATGCTCTTCATCTTCGTCTTCTTCCCAATTCGCACTTCAACAATTCCATTTCCTTCTTATGTTCGCAATCACTCACACTATGCGAAGCAAATCTCCAACAACAGAAACGTCTTCAAAAGGTTCAAAAGCTTCAGACATTACTAAGCAGGGGTCACACAATAACCGCTCGAAGGTTCCTCAAATCCCTTCTTCTCTCCAAAACCCTCTTCTCTTCTCTCTCTCAATTTCACGCGCTCGTCTCCAAACCCTTATTTTCCGACACCCTCTTATGGCTTTGCTCCGTTTCCAAAATGCTCAACGAAGCTACCGAGCTTTACTCTTCCATGCGAAAAGATGGTTTTCTCCCTTCCACGCGCTCTATCAACCGTTTGCTACGAACTCTGGTCGCTTCCCGACACTTCGAGAAAACCCTCACTCTCTTCGCTGACGTTGTGGATTCCGGTGTTCGACTCGATTCTGTCTCTTACGGCAAAGCTGTTCAGGCTGCGGTGATGTTGAAGGACCTTGATAAGGGTTTTGAGTTGATGAGTTCCATGGAAAAAGAAGGGATGTGTCCCTCTGTTTTCGTGTATAACTTGGTGTTGGGTGGGTTGTGTAAAGTGAGAAGGATCAGGGATGCTCGGAACCTGTTCGATGAAATGATTCAGAGAAACCGGGTTCCCAATACGGTTACGTATAATACGCTTATTGATGGGTATTGTAAGGTGGGTGACATAGGGGAAGCTTTTCGCTTTAAGGAGAGGATGAAGGAACAAAATGTGGAGCCTAATGTTATCACCTACAATTGCTTGTTAAATGGTCTCTGTGGTTCAGGGAGGGTGGAAGATGCGAAGAAGATTTTGCTGGAGATGGAGGGGAATGGTTTTTTGCCTGGTGGGTTTTTGAGTGTTGTGTTTGATGATCATTCAAAGTGTGCAAGTGATAATGGATCGGTGGATAGACAAGGAATGAGGATTGACGAGCGTACCTATTGTATTTTGTTGAATGGACTTTGCAGGGTTGGAAGGGTTGAAAAGGCCAAGGAGGTTTTAGCCAAGTTAGTGGATAATGGAGTAAGTCCAAGCAAGATTTCATATAACATATTGGTGAATGCGTATTGCCAAGAGGGTGACATGGAGAAAGCTATACAGACAACTGAACTAATGGAAGAACGAGGGTTGAAGCCTAGTAGTGTCACCTTTAATACCCTTATTAACAAACTCTGTGAAACTGGGGAGGTGGACCAGGTAGAGACATGGGTTAAGAAGATGATTGAGAAGGGTGTTTCCCCCACTGTGGAGACTTATAACACGTTGATTGATTGTTATGGCCGGATTCGCCATTTTGTTAGGTGTTTTGAGATTCTTGAGGAGATGGAGAAGACTGGGATACAGCCTAATGTCATAAGTTATGGTTCTCTAATAAATTGTCTGTGCAAAGATTGTAAGCTTCTTGATGCTGAGATTGTGCTTGTGGATATGATAGGTCGTGGGGTTTCTCCAAATGCAGAAATATATAATATGCTCATCGAAGCTAGTTGCTCATTGAGTAAAATGAAAGATGCCTTCAGATTTTTTGATGAAATGATAAAAAATGGAATAGATGCAACTCTTGTGACGTACAATACGCTGATAAATGGACTGGGAAGAAATGGGAGGGTAAAGGAAGCTGAGGATTTGTTTCTCCAAATGACTGACAAGGGATATAATCCAGATGTAATAACATACAATTCCCTGATCTCAGGATATGCTCAGTCAGGTGACACCCAGAAATGCCTTGAATTGTATGACAATATGAAGACACTAGGCGTAAAACCTACAATTGGAACTTTTCACCCTTTGATCTATGCATGCAGGAAGGAAGGTGTGGTGACAATGGAGAGAATGTTTCAAGAAATGTTACAAATGGATTTGGTTCCCAATCGAGTTGTATATAATGAAATGATTTACTGTTATGCGGAAGATGGAAATGTTCAGAAGGCAATGTCCTTGCACCAACAGATGGTTGATCAGGGAGTTGACTCTGACAAGGTGACTTACAACTGCTTGATTCTAGCATACCTTAGAGAAAGACGCGTTTCAGAACTAAAGCATCTTGTCGATGATATGAAGGCTAAAGGACTGGTTCCAAAAGTTGATACGTATAACATACTGGTTAAGGGACATTGCGACTTAAAAGATTTCAGTGGTGCATATTTCTGGTATCGGGAAATGTTTGACAGGGGTTTTGTTTTGAATGCCCGCATCTGCTACCAGCTGATATCCGGGCTAAAAGAGGAGGGAATGCTGCGAGAGGCCCAAATTGTATCCACAGAAATGAGTAACACTGAACTAAACAACTAG 2340 0.4252 MWLGRHYALHLRLLPNSHFNNSISFLCSQSLTLCEANLQQQKRLQKVQKLQTLLSRGHTITARRFLKSLLLSKTLFSSLSQFHALVSKPLFSDTLLWLCSVSKMLNEATELYSSMRKDGFLPSTRSINRLLRTLVASRHFEKTLTLFADVVDSGVRLDSVSYGKAVQAAVMLKDLDKGFELMSSMEKEGMCPSVFVYNLVLGGLCKVRRIRDARNLFDEMIQRNRVPNTVTYNTLIDGYCKVGDIGEAFRFKERMKEQNVEPNVITYNCLLNGLCGSGRVEDAKKILLEMEGNGFLPGGFLSVVFDDHSKCASDNGSVDRQGMRIDERTYCILLNGLCRVGRVEKAKEVLAKLVDNGVSPSKISYNILVNAYCQEGDMEKAIQTTELMEERGLKPSSVTFNTLINKLCETGEVDQVETWVKKMIEKGVSPTVETYNTLIDCYGRIRHFVRCFEILEEMEKTGIQPNVISYGSLINCLCKDCKLLDAEIVLVDMIGRGVSPNAEIYNMLIEASCSLSKMKDAFRFFDEMIKNGIDATLVTYNTLINGLGRNGRVKEAEDLFLQMTDKGYNPDVITYNSLISGYAQSGDTQKCLELYDNMKTLGVKPTIGTFHPLIYACRKEGVVTMERMFQEMLQMDLVPNRVVYNEMIYCYAEDGNVQKAMSLHQQMVDQGVDSDKVTYNCLILAYLRERRVSELKHLVDDMKAKGLVPKVDTYNILVKGHCDLKDFSGAYFWYREMFDRGFVLNARICYQLISGLKEEGMLREAQIVSTEMSNTELNN* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0281 779 Gene3D Tetratricopeptide repeat domain 301 423 IPR011990 GO:0005515
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 434 467 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 196 229 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 363 396 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 504 533 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 677 709 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 230 264 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 398 432 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 538 572 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 329 361 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 468 502 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 265 297 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 713 746 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 573 606 IPR002885 -
Apr4g0281 779 TIGRFAM PPR: pentatricopeptide repeat domain 642 672 IPR002885 -
Apr4g0281 779 Gene3D Tetratricopeptide repeat domain 518 624 IPR011990 GO:0005515
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Apr4g0281 779 Gene3D Tetratricopeptide repeat domain 226 296 IPR011990 GO:0005515
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Apr4g0281 779 Gene3D Tetratricopeptide repeat domain 87 225 IPR011990 GO:0005515
Apr4g0281 779 Gene3D Tetratricopeptide repeat domain 625 778 IPR011990 GO:0005515
Apr4g0281 779 Gene3D Tetratricopeptide repeat domain 424 517 IPR011990 GO:0005515
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Apr4g0281 779 Pfam PPR repeat 322 351 IPR002885 -
Apr4g0281 779 Pfam PPR repeat 189 220 IPR002885 -
Apr4g0281 779 Pfam PPR repeat 496 528 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
Apr4g0281 779 Pfam PPR repeat family 675 722 IPR002885 -
Apr4g0281 779 Pfam PPR repeat family 537 578 IPR002885 -
Apr4g0281 779 Pfam PPR repeat family 363 408 IPR002885 -
Apr4g0281 779 Pfam PPR repeat family 430 479 IPR002885 -
Apr4g0281 779 Pfam PPR repeat family 227 275 IPR002885 -
Apr4g0281 779 PANTHER ATPASE EXPRESSION PROTEIN 3 21 770 - -
Apr4g0281 779 SUPERFAMILY HCP-like 332 604 - -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 536 570 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Apr4g0281 779 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Apr4g0281 779 Pfam PPR repeat 94 120 IPR002885 -
Apr4g0281 779 Pfam PPR repeat 642 672 IPR002885 -
Apr4g0281 779 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 21 770 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0281 435 778 Glycosyltransferase AT1G05670 26.879 2.90e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0281 - - gmx:100786292 1266.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0281 4 2344497 2348241 Apr4g0281 4 2344497 2348241 ECH