LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g0273	ATGCATTCGAGTCACTTGCTTCTCGAGGAGCCTATTCGGATGATTTCTATCCTTGAGTCATCCAAGGCCAGCTTCTTCCCCGCAATGACGAAGATCGTTGGTACCTTGGGTCCTAAATCTCGATCGGTAGAGATTATTTCTGCGTGTCTCAAAGCTGGAATGTCTGTGGCTCGTTTCGACTTCTCTTGGAGCGACCCTGAATACCACCAGGAAACTTTGGAGAATTTGAAAACTGCTATCAAAACTACTAAGAAGCTCTGTGCTGTTATGCTGGACACGGTGGGTGCAGAAATGCAGGTTGTTAACAAAAGTGAGAAATCGATATCGCTTCAGGCTGATGCTCAGGTTGTTCTTACTCCTGATCAGGGACAAGAGGCATCTTCACAGATACTGCCTATCAATTTTGATGGACTGGCAAAGTCAATGAAGAAGGGAGACACCATTTTTGTTGGTCAATATTTGTTCACAGGAAGTGAAACTACTTCTGTGTGGCTAGAGGTATCTGAAGTTACAGGAAAGGATGTCGTTTGTACTATAAAAAATTCAGCAACATTGGCTGGATCTTTGTTCACTTTGCATGCCTCTCAAATTCATATTGACCTGCCTACCCTCTCTGATAAAGATAAGGAGGTTATAAGCACCTGGGGACAGAAAAACAAGATTGATTTTCTATCATTGTCATATACTAGGCATGCTGAAGATGTTCGCCAGGCCCGTGAATTCCTTTCTAAGTTAGGTGATCTAGACCAGACTCAAATTTTTGCGAAGATTGAAAATGTTGAGGGATTGACCCATTTTGATGAGATTCTACAAGAGGCAGATGGTATTATCCTTTCCCGTGGGAATTTGGGCATTGATCTGCCACCTGAGAAAGTATTTTTTTTCCAAAAATCTGCCCTTTACAAGTGTAATATGGCTGGGAAACCTGCTGTGCTTACACGAGTTGTGGATAGCATGACTGACAACTTAAGACCAACTCGTGCGGAAGCCACTGATGTTGCCAATGCTGTTTTAGATGGAAGTGATGCAATACTTCTGGGTGCCGAGACTTTACGTGGGTTATACCCTGTTGAGACTATTTCTACAGTTGGCAAAATTTGTGCAGAAGCTGAGAAAGTTTTCAATCAAGACCTTTATTTTAAGAAGACCGTCAAATATGTTGGAGAACCCATGACCCACTTGGAATCCATTGCATCCTCTGCTGTACGAGCAGCTATTAAGGTGAAGGCTTCCGTTATTATCTGCTTCACGTCGTCTGGAAGGGCAGCAAGATTGATAGCAAAATATAGGCCAACAATGCCAGTTCTCTCTGTTGTGATCCCCCGACTAAAGACAAATCAACTGAAATGGAGCTTTAGTGGGGCTTTCGAGGCTAGGCAATCACTGATTGTAAGAGGTCTCTTTCCCGTGCTTGCGGATCCCCGACATCCTGCCGAGTCAACAGGTGCCACAAACGAATCTATTCTCAAGGTTGCCCTTGATCATGGAAAAGCATCTGGAGTTATAAAGCCACATGATCGAGTGGTGGTTTGTCAGAAAGTTGGCGATGCATCTGTGGTTAAGATTATCGAGCTTGAAGATTGA	1584	0.4362	MHSSHLLLEEPIRMISILESSKASFFPAMTKIVGTLGPKSRSVEIISACLKAGMSVARFDFSWSDPEYHQETLENLKTAIKTTKKLCAVMLDTVGAEMQVVNKSEKSISLQADAQVVLTPDQGQEASSQILPINFDGLAKSMKKGDTIFVGQYLFTGSETTSVWLEVSEVTGKDVVCTIKNSATLAGSLFTLHASQIHIDLPTLSDKDKEVISTWGQKNKIDFLSLSYTRHAEDVRQAREFLSKLGDLDQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFFFQKSALYKCNMAGKPAVLTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISTVGKICAEAEKVFNQDLYFKKTVKYVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPVLADPRHPAESTGATNESILKVALDHGKASGVIKPHDRVVVCQKVGDASVVKIIELED*	528

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g0273	527	Pfam	Pyruvate kinase, alpha/beta domain	395	522	IPR015795	-
	Apr4g0273	527	PANTHER	PYRUVATE KINASE	2	527	-	-
	Apr4g0273	527	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	6	375	IPR015813	GO:0003824
	Apr4g0273	527	Gene3D	-	363	525	IPR036918	-
	Apr4g0273	527	TIGRFAM	pyruv_kin: pyruvate kinase	30	516	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	Pfam	Pyruvate kinase, barrel domain	30	375	IPR015793	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	SUPERFAMILY	PK C-terminal domain-like	358	520	IPR036918	-
	Apr4g0273	527	Gene3D	-	97	201	IPR015806	GO:0004743\|GO:0006096
	Apr4g0273	527	Gene3D	-	30	362	IPR040442	-
	Apr4g0273	527	PANTHER	PYRUVATE KINASE	2	527	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	SUPERFAMILY	PK beta-barrel domain-like	103	186	IPR011037	-
	Apr4g0273	527	PRINTS	Pyruvate kinase family signature	85	101	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	PRINTS	Pyruvate kinase family signature	221	235	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	PRINTS	Pyruvate kinase family signature	253	279	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	PRINTS	Pyruvate kinase family signature	280	304	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	PRINTS	Pyruvate kinase family signature	329	347	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955
	Apr4g0273	527	PRINTS	Pyruvate kinase family signature	348	364	IPR001697	GO:0000287\|GO:0004743\|GO:0006096\|GO:0030955

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g0273	Apr-Chr4	2282713	2289723	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g0273	K00873		-	gmx:100807864	988.793

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr4g0273	4	2282713	2289723	Apr4g0273	4	2282713	2289723	ECH
	Apr4g0273	4	2282713	2289723	Apr8g0575	8	5145927	5154282	PCT