Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0265 ATGGCAGTTCTGGAAACGAAGTCCTTCTTCCACTCTTCTTCGCTTTGTTTTCTTCAATCTCTCCTCAAACCCAACACCTCCAAACGCCGCCATGCCACTCATTACCTTCCACCCTCAAACGATCCACACTCCCTCCACCACGCCATCCACTTGTCCTCTCGACACGGCGACACCAACCTCGCCAAGGCCATCCACGCTTCCCTTCTCAAACACGAGGAAGACACTCACCTATCCACCGCTCTCATATCCACTTACCTCAAATTGGGCCTTCTCTCCCACGCCCAACGCCTCTTCCTCTCCCTCTCTTCCCCCAACGTCGTCTCTTACTCCACCCTCATTTCCGGCCTATCCAAGGCCCATCAACACCTCCAAGCCCTCCGCCTCTTCTTTCACATGACGCGTTCCCACGTCCTCCCCAACGAATACACATACGTCGCCGTTTTAGCCGCTTCCACTCGGATTCTTCACTTCCAATTGGGCCTTCAAATACACGCCGCTGCAATCAAAACGGGCCACTTGGACTCTCCTTTCGTCGCCAACGCCCTCATGTCTCTCTACGCCAAGTGTGGGCCTTTCCCGGTTGTGCTTAAGCTGTTCGATGAAATGCCGCACAGGGATATTGCGTCGTGGAACACCGTTATGTCCGGTGCGCTGCAGGAGCTTACGTACGACGCTGCGTTTCAGTTGTTTCGTGACATGCAAGCCAGTGATGCGTTTCGAGTGGATTATTTCACGTTGTCGATACTTTTGACTGCGTGTGCTGCAAGTGTTTCGGTGTTGGAAGGCCAGCAAGTCCACGCGCATGCTGTTAAGGTTGGGTTGGACGCTGAATTGAACGTTGGGAATGCTCTTATTGGGTACTATGCTAAGTGTGGAACTCTTGATGATGTGGTGTGGTTGTTTCAGAGGATGAGTACGAGGGATGTTATAACTTGGACGGAGATGATCACGGTGTATATGGAGTTTGGGTTGGTGGATTTAGCTTTGAAGGTGTTTGATGACATGCCTGAAAAGAATTCTGTGTCGTATAATGCTCTTTTGTCTGGTTTTTGTAGAAATGGCCAAGGTTTAAAGGCTATGGATTTGTTTATAAAAATGGTGGAAGAGGGCTTGGAGTTAACGAATTTCTCTTTGACTAGTGGTGTTAATGCTTGTGGCTTGCTTGCTGACTATTGGGTCAGCAAGCAGATTCATGGATTTGCTATCAAGTTTGGTTTTGGATCAAATGCTTGCATTGAAACTGCTTTGCTTGACATGTACACGAGGTGTGGGAGGATGGCGGATGCAAAGAAGATGTTTTGCAGATGGGAGTTGGAGGAATTTAGGTCCGTAGCTTGGACATCCATGATATGTGGGTATGCTCGAAATGGGAAACCAGAAGAGGCAATTTCTCTTTTTCACCTTGGTCAATCGGATGGGAAAGTGATTATGGATGAAGTTGCATCGGTTTCAATGCTCGGTCTTTGTGGAACTGTCGGACATCTTGATGTGGGTAAGCAAATCCACTGCCATGTTCTTAAATTTGGCTTACAGTCTAATTTGGAAGTAGGGAATGCAGTTGTTAGCATGTATTTCAAGTGTGGGAATGTTGAAGATGCAATGAAGATATTTAGTGATATGCTTTCTCCCGATATAGTTTCTTGGAATACTTTGATTTCTGGAAATCTTCTGCACAGACAGGGGGACAGAGCACTGGAAACATGGTTGAAAATGCAGGAGGAGGGCATAAAACCTGACCAAGTTACATTTGTTTTGGTAATTTCAACTTACAGGCACACTAACTCAAATTTGGTTGATGACTGTCGTCGTTTGTTTAATTCAATGAGAAGTGTTTTTCAAATTGAGCCCACATCTGAGCACTATTCCTCCTTCATCAGTGTTTTGGGACACTGGGGTCTACTGGAAGAAGCACTAGAAACTATCAATAAAATGCCTTTTCAGCCTTCTGCTTTTGTTTGGCGCGCTTTGCTTGATGGTTGTAGGCTACATAAGAATACAATGATTGGAAAATGGGCTACTAAGAGTATTCTTGCCCTGGAACCTAACGATCCTTCTACCTTTATACTTGTTTCAAACCTGCATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTCAGGGAAAGTATGAGAGAAAAGGGATTTCGCAAACTCCCAGCTCAAAGTTGGATCGTTTGTCAGAAGAAAATACATACATTTTATGCTCGAGATCGATCACATCCACAAGAGAAAGACATATATAGTGGATTGGAGATTCTGATCTTGGAATGCCAAAAAATTGGATACGAACCAGACACGAGTTTTGTTCTCCATGAAGTAGAGGAGCATCAAAAGAAAAATTTTCTGTTCTATCACAGTTCAAAACTGGCAGCAACTTATGGAATACTGATGACCAAGCCGGGAAAGCCCATTCGGATTGTAAAGAATGTCCTTCTTTGTGGGGACTGCCATACATTCGTAAAATATGCATCTATTGTCACGAAGAGGGATATTTTTCTCAGAGATTCTTCTGGATTTCATTGTTTCTCCAATGGCAAGTGCTCATGCAGAGACACTTGGTTGATCTAA 2568 0.4521 MAVLETKSFFHSSSLCFLQSLLKPNTSKRRHATHYLPPSNDPHSLHHAIHLSSRHGDTNLAKAIHASLLKHEEDTHLSTALISTYLKLGLLSHAQRLFLSLSSPNVVSYSTLISGLSKAHQHLQALRLFFHMTRSHVLPNEYTYVAVLAASTRILHFQLGLQIHAAAIKTGHLDSPFVANALMSLYAKCGPFPVVLKLFDEMPHRDIASWNTVMSGALQELTYDAAFQLFRDMQASDAFRVDYFTLSILLTACAASVSVLEGQQVHAHAVKVGLDAELNVGNALIGYYAKCGTLDDVVWLFQRMSTRDVITWTEMITVYMEFGLVDLALKVFDDMPEKNSVSYNALLSGFCRNGQGLKAMDLFIKMVEEGLELTNFSLTSGVNACGLLADYWVSKQIHGFAIKFGFGSNACIETALLDMYTRCGRMADAKKMFCRWELEEFRSVAWTSMICGYARNGKPEEAISLFHLGQSDGKVIMDEVASVSMLGLCGTVGHLDVGKQIHCHVLKFGLQSNLEVGNAVVSMYFKCGNVEDAMKIFSDMLSPDIVSWNTLISGNLLHRQGDRALETWLKMQEEGIKPDQVTFVLVISTYRHTNSNLVDDCRRLFNSMRSVFQIEPTSEHYSSFISVLGHWGLLEEALETINKMPFQPSAFVWRALLDGCRLHKNTMIGKWATKSILALEPNDPSTFILVSNLHSASGRWDRSEMVRESMREKGFRKLPAQSWIVCQKKIHTFYARDRSHPQEKDIYSGLEILILECQKIGYEPDTSFVLHEVEEHQKKNFLFYHSSKLAATYGILMTKPGKPIRIVKNVLLCGDCHTFVKYASIVTKRDIFLRDSSGFHCFSNGKCSCRDTWLI* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0265 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 338 IPR002885 -
Apr4g0265 855 TIGRFAM PPR: pentatricopeptide repeat domain 107 141 IPR002885 -
Apr4g0265 855 TIGRFAM PPR: pentatricopeptide repeat domain 444 468 IPR002885 -
Apr4g0265 855 TIGRFAM PPR: pentatricopeptide repeat domain 341 373 IPR002885 -
Apr4g0265 855 TIGRFAM PPR: pentatricopeptide repeat domain 518 541 IPR002885 -
Apr4g0265 855 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Apr4g0265 855 Pfam DYW family of nucleic acid deaminases 761 853 IPR032867 GO:0008270
Apr4g0265 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Apr4g0265 855 Gene3D Tetratricopeptide repeat domain 259 397 IPR011990 GO:0005515
Apr4g0265 855 Gene3D Tetratricopeptide repeat domain 595 742 IPR011990 GO:0005515
Apr4g0265 855 Gene3D Tetratricopeptide repeat domain 154 258 IPR011990 GO:0005515
Apr4g0265 855 Gene3D Tetratricopeptide repeat domain 470 594 IPR011990 GO:0005515
Apr4g0265 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Apr4g0265 855 PANTHER OS07G0172600 PROTEIN 374 461 - -
Apr4g0265 855 PANTHER OS07G0172600 PROTEIN 456 839 - -
Apr4g0265 855 PANTHER OS07G0172600 PROTEIN 22 384 - -
Apr4g0265 855 Pfam PPR repeat family 104 148 IPR002885 -
Apr4g0265 855 Pfam PPR repeat family 543 589 IPR002885 -
Apr4g0265 855 Pfam PPR repeat family 338 385 IPR002885 -
Apr4g0265 855 Pfam PPR repeat family 206 254 IPR002885 -
Apr4g0265 855 Gene3D Tetratricopeptide repeat domain 23 153 IPR011990 GO:0005515
Apr4g0265 855 Pfam PPR repeat 414 436 IPR002885 -
Apr4g0265 855 Pfam PPR repeat 444 468 IPR002885 -
Apr4g0265 855 Pfam PPR repeat 518 541 IPR002885 -
Apr4g0265 855 Pfam PPR repeat 620 644 IPR002885 -
Apr4g0265 855 Pfam PPR repeat 282 308 IPR002885 -
Apr4g0265 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Apr4g0265 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 456 839 - -
Apr4g0265 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 22 384 - -
Apr4g0265 855 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 374 461 - -
Apr4g0265 855 Pfam E motif 663 724 IPR046848 -
Apr4g0265 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Apr4g0265 855 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0265 Apr-Chr4 2228443 2231941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0265 54 853 Glycoside Hydrolase AT3G49170 34.686 4.21e-158 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0265 - - gmx:100784704 1313.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0265 4 2228443 2231941 Apr4g0265 4 2228443 2231941 ECH