Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0264 ATGGACGGACATCGTAAACAGCAGGTATCGTTGAGAGGAGCAAGTGAGAAGGAGATTACGAGAGACGACCTTCTTCAGAAGGTCTCTCGCGAAAGAGAGCTTCGCAATTATGCCAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTATGGAGGTGCTTCAAGGTCACAAAGATGGTTGCTCTGCAGCTTCAGCAGGAGTGGGAGATAGTGGTGAATCATTATACTGGTGTGATGACAGCATGTTGGATTTCAAACAACTTGTTGAGACCATTTCTGTTCTTTATCACACGTATCACTACTCAGCATCAGAAGGTCCACATCAAGAAAATAGACTCTATGAGGCTGTGCTTTACAATCCTACTGGAAAGCATGAAATCATCTGATTCAAGGCAGAACTTTTGCTCTCTGGCAATTGGTACAACTGAAGAAAGAAGAATATGGAGTTACCAGGCACAGCAGCTGACTTCTCTTAGTTTCTTCATTCTTTCAGAGTTTTGTGAATGCAATTCAGGGGCTCAAGATATTATTATTATTACGTCCCTAGCAATGCGTGTTCTTGTTATGTTAACTGATCTGAAAGGATGGAAAGGCATTACAGATGACAATCACTTAGATGCAGATTTAGCAGTGGAAGGTTTAATTCAGTTCATGGGGGGTACTAATAGTGGTTGTTATGTGTCTATTGCCAGATATATTAGTGCATTGGATAATTATTCTTCTCAGTCAAAAGTTATAACCCAGGCAGATGAAAAATTTTTCATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCATTTTATCTGACAAACTGTGATGTAAAAGGCCCTGGTATGCTGGATGTCAACCATGCTGCTAAGCAGTATATTGTTTATCTGCTGACCATACCTTGGCTTGTGCAGCATCTCCCATCTGTTCTTCTACCTGCTTTAAAGCACAAATCTATTTTGTTTCCATGCTTCCAGACTCTATTGATTTTGAAAGAGAACATTTTAACAGAGATGTCAGAGTTGGTCAAATCAGAGAATTTTGACTCTTTCAAGGTGATTCCACCAGTTGGTTGGGCCCTCACTAACACTATATGCTTAGCAACAGGGAATGAGAATGAATCCTTCAATCAAGGTTTAGACTATGCATTATATGTCCACGTTGTTATTACTCTAGCAGAGGGCCTACTGGCTTGTCTTGATAATGTTGGAAGGGTCAGAAAGAAAAAGAAAGCCTTTCAAACTGATGTTGAAAGTTCAACACAGCCAGTTGATATGGTTCTGCAGGAGGGTGAATCAACCAATGAGTCCTTAATAATATCATACATGGACCAGTTTAGGCCTGTTTGTCAGCAGTGGCATCTCACAAATCTTTTGACATCAATAGATAGAGATGCCTCTAACAAGGCTGGGACTTTGGTCTCAAATAGTCTGGAATGTTTGGGGAAGCTAGATTTGTGTGATGTTGCACTTTTTTATTCTCAGTTATTTAGAATATTTTCAGCCTTGAGTCCAATTCGTGGCTCATTACCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGCGATTGTGGGGTGTACTGGAGGATTCCTTTTTTTCTGGAGACAAACATAATGCTGATAATCACATGAGTGAAAACAGAAAACATAAAGCATTTGAGAAGATGCAAAAACACACGAGTAAAGATGGGGCTAATAAGTGGGTCACTGTACTTCATAAATTTACAGGTAAGTCACAAGCAGGTACAGATTGCACAGATTCTACTAGCAGTCACTCTGAGCCCAGCAGAGTGAATGAGGATTTGTCAGATTTATGGGACATAGAACCTATGAGGCATGGCCCGCAAGGCATTCCAAGGGATATATTTTCTGTGCTTCATCTTTTCTGTGCAACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAATTTTATGAGAAACAGGTTCCATTCAGATTAGAGCAGCAACGAAGAATTGCATCAATGCTCAATACCCTAGTTTATAATGGCTTGTCCCATGTTAGTTGTCATCATAATAGGCCTCTCATGGATTGTGCTGTTAGATGCTTACATTTACTGTATGAAAGGGATTGTAGACACCCATTTTGTCCTCCTGATTTGTGGCTTTCTCCTGCTAACAAAAGCCGCCCACCAATAGCAGTTGCTGCCAGAACTCATGAAGTTTTATCAGCCAACCTGAGATCTGATGATTCACCAGCTTCACTGAGTGTCGGTTCTGTAGTTACCATTGCTCCTCATGTTTTCCCTTTTGAAGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCATCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGTGCTGTTGAGATAGTAATACGTCGAGGTCATATTGTTGAAGATGGATTTCAGCAATTAAATTCCCTTGGGTCAAGGTTGAAGTCATCAATTCATGTATCATTTGTCAGTGAATGTGGCCTTTTGGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTTTAACTGACATATCAAAAGCAGCATTTGCTCCTGAATATGGACTCTTTACCCAAACCTCAACATCAGACAGGCTTCTAATTCCAACAGCATCTGCCAGATATTTGGAGAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTGGGCAAAGCTCTATATGAAGGAATATTACTAGATTACTCTTTCTCTCATGTTTTTGTACAAAAGCTATTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAATTATGATGGTGATGTCAAGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGATTGAGCTCAAGTCTGGTGGCAAAGATATTTCTGTGACAAATGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTCAATCAACAGATATTGCCGTTTTCAAATGCATTTTATAGAGGGTTAACTGATCTTATATCACCATCCTGGTTAAAGTTATTCAATGCTAGTGAGTTTAATCAGTTGCTTTCAGGTGGCAATTATGATATTGACATTGATGATTTGAAAAATAACACACGATACACTGGTGGTTACAATGAGGGAAGCCGGACAATCAAGATCTTTTGGGAGGTTGCATGTGATGTCCCTCTTTGGGCAACAATTGGAGGACAAGATGTTGATCGACTTCCATCAGCTTCAACCTGCTACAATACTCTCAAGCTTCCAACATACAAACGTCCAGGCACTTTGAGAACAAAGCTTTTATATGCTATCAGTTCAAATGCTGGATTTGAACTTTCTTGA 3357 0.4015 MDGHRKQQVSLRGASEKEITRDDLLQKVSRERELRNYAKRAAAAALFIQRVWRCFKVTKMVALQLQQEWEIVVNHYTGVMTACWISNNLLRPFLFFITRITTQHQKVHIKKIDSMRLCFTILLESMKSSDSRQNFCSLAIGTTEERRIWSYQAQQLTSLSFFILSEFCECNSGAQDIIIITSLAMRVLVMLTDLKGWKGITDDNHLDADLAVEGLIQFMGGTNSGCYVSIARYISALDNYSSQSKVITQADEKFFITASAITLAVRPFYLTNCDVKGPGMLDVNHAAKQYIVYLLTIPWLVQHLPSVLLPALKHKSILFPCFQTLLILKENILTEMSELVKSENFDSFKVIPPVGWALTNTICLATGNENESFNQGLDYALYVHVVITLAEGLLACLDNVGRVRKKKKAFQTDVESSTQPVDMVLQEGESTNESLIISYMDQFRPVCQQWHLTNLLTSIDRDASNKAGTLVSNSLECLGKLDLCDVALFYSQLFRIFSALSPIRGSLPVLNMLSFTPGFLVRLWGVLEDSFFSGDKHNADNHMSENRKHKAFEKMQKHTSKDGANKWVTVLHKFTGKSQAGTDCTDSTSSHSEPSRVNEDLSDLWDIEPMRHGPQGIPRDIFSVLHLFCATYSHLLLVLDDIEFYEKQVPFRLEQQRRIASMLNTLVYNGLSHVSCHHNRPLMDCAVRCLHLLYERDCRHPFCPPDLWLSPANKSRPPIAVAARTHEVLSANLRSDDSPASLSVGSVVTIAPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAVEIVIRRGHIVEDGFQQLNSLGSRLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDISKAAFAPEYGLFTQTSTSDRLLIPTASARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVKELSLDFTVTEESLGKRYVIELKSGGKDISVTNENKMQYIHAMADYKLNQQILPFSNAFYRGLTDLISPSWLKLFNASEFNQLLSGGNYDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVACDVPLWATIGGQDVDRLPSASTCYNTLKLPTYKRPGTLRTKLLYAISSNAGFELS* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0264 1118 Gene3D Hect, E3 ligase catalytic domains 791 1029 - -
Apr4g0264 1118 Gene3D Hect, E3 ligase catalytic domain 915 994 - -
Apr4g0264 1118 CDD HECTc 790 1116 IPR000569 GO:0004842
Apr4g0264 1118 Pfam HECT-domain (ubiquitin-transferase) 844 1062 IPR000569 GO:0004842
Apr4g0264 1118 Pfam HECT-domain (ubiquitin-transferase) 1075 1118 IPR000569 GO:0004842
Apr4g0264 1118 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 1062 - -
Apr4g0264 1118 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1074 1118 - -
Apr4g0264 1118 SUPERFAMILY Hect, E3 ligase catalytic domain 789 1111 IPR035983 GO:0004842
Apr4g0264 1118 ProSiteProfiles HECT domain profile. 813 1118 IPR000569 GO:0004842
Apr4g0264 1118 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1074 1118 IPR044611 GO:0000209|GO:0061630
Apr4g0264 1118 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 4 1062 IPR044611 GO:0000209|GO:0061630
Apr4g0264 1118 MobiDBLite consensus disorder prediction 578 595 - -
Apr4g0264 1118 Gene3D Hect, E3 ligase catalytic domain 1032 1068 - -
Apr4g0264 1118 Gene3D Hect, E3 ligase catalytic domain 1069 1118 - -
Apr4g0264 1118 MobiDBLite consensus disorder prediction 578 597 - -
Apr4g0264 1118 SMART hect_3 807 1118 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0264 Apr-Chr4 2218402 2227968 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0264 K10588 - gmx:100527169 1966.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0264 4 2218402 2227968 Apr4g0264 4 2218402 2227968 ECH