Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0258 ATGAAGCTCCTCCAAAAAGATTTTGCTGCGAACCAAAGCGGCACCGCCAAGATCATGCCCGAAGAACCCGACGACGTGTGGCTCCTCTACAACCTCATTCTCCCCGGCGACGTCGTTTCCGCCGACACCACTCGCAAGGTCCGTCTCGAATCCACCAAAACCGCTGCCTCACGTGTCAAAATCACCCTCCACCTCAAAGTCACGTGCCGCGACTTCCTCAACGACTCCTCCACCCTCCGCCTCCGCGGCAAAAACCTCCAACCCAACCCTTATGTCGCCGCCGGTTCCTTCCACACCCTCACACTCGAACCCAACAAAACCTTCGACCTACGCAAGAAGCTCTGGAACTCCGACGCCGTTGAAGCCCTAAACGAAAGCGCCCAAAATTCCAAATCCTCCTCCTCCCTCGCCGTCGTTCTCTTCCACCAAAGCCACGCCGAGATTTACCTAGTCGGAAACGGCGCCACCACTCGCTTTTCGAACGTCGAAGCCTCTTCCAATTCTTCTAGGAACAAGGCTGTTTCGTCGACCGTGTTTTTTCGTGACGTTTTCGCTGCTCTCGTGAGGCACGTGGATTTCACGGTGGTTAAGAGAGTGGTGATAGCGAGCGAGGCGTCGACGAAGGACGAGTTTCGTAGGTTTGTTTTGTCGGAAGCGAAGAGATTAAGGATGACGTGGATGGAGGAGAACAAGTCCCGCATTGTGGTTGCATCGTCGGGGAAAAACGGTGATTTGGGGGAAGTTTTGGGTGACCGAGCGGTGACGGATTTGATAAAGGACAGTAAGGTTGGGATTGAGGTGAGGGCTTTTAGGGAGTTGTGGGATATGGTGTGTAACAATTCGGATCGCGCGTGCTATGGACCGCATAATGTGGAGAGTGCGCATGAGATGAGGGCTATTGAGACCCTTTTGATCACTGATGAGCTTTATAGAAATGCTGACATTGGGATTAGGCAAAGGTATGGTGGTTTGGTGAAAGAAGTGAAAGAGGGTGGTGGAAAGGTTTTGGTCTATTCGTCTATGCATGTTTCAGCACCTCAACTCTCTATGCTTACGGGTGTTGCTGCCATTCTTAGGTTTCCTTTGCCTCATCTCCAAGACTTTGATGTTTAG 1113 0.5211 MKLLQKDFAANQSGTAKIMPEEPDDVWLLYNLILPGDVVSADTTRKVRLESTKTAASRVKITLHLKVTCRDFLNDSSTLRLRGKNLQPNPYVAAGSFHTLTLEPNKTFDLRKKLWNSDAVEALNESAQNSKSSSSLAVVLFHQSHAEIYLVGNGATTRFSNVEASSNSSRNKAVSSTVFFRDVFAALVRHVDFTVVKRVVIASEASTKDEFRRFVLSEAKRLRMTWMEENKSRIVVASSGKNGDLGEVLGDRAVTDLIKDSKVGIEVRAFRELWDMVCNNSDRACYGPHNVESAHEMRAIETLLITDELYRNADIGIRQRYGGLVKEVKEGGGKVLVYSSMHVSAPQLSMLTGVAAILRFPLPHLQDFDV* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0258 370 Gene3D - 260 369 IPR029064 -
Apr4g0258 370 Gene3D Pelota, domain A 2 133 IPR038069 -
Apr4g0258 370 Pfam eRF1 domain 1 1 126 IPR005140 -
Apr4g0258 370 PANTHER PELOTA 1 369 IPR004405 GO:0070481|GO:0070966|GO:0071025
Apr4g0258 370 SUPERFAMILY Dom34/Pelota N-terminal domain-like 1 126 IPR038069 -
Apr4g0258 370 TIGRFAM pelota: mRNA surveillance protein pelota 6 362 IPR004405 GO:0070481|GO:0070966|GO:0071025
Apr4g0258 370 SUPERFAMILY L30e-like 254 362 IPR029064 -
Apr4g0258 370 Pfam eRF1 domain 3 266 362 IPR005142 -
Apr4g0258 370 SMART eRF1_1_2 1 128 IPR005140 -
Apr4g0258 370 SUPERFAMILY Translational machinery components 133 262 - -
Apr4g0258 370 Gene3D eRF1 domain 2 134 258 IPR042226 -
Apr4g0258 370 PANTHER EUKARYOTIC RELEASE FACTOR 1 (ERF1) FAMILY PROTEIN 1 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0258 Apr-Chr4 2178571 2179697 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0258 K06965 - gmx:100803618 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0258 4 2178571 2179697 Apr4g0258 4 2178571 2179697 ECH