Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0240 ATGGCGTTCCCTTTGGGAGCCCTCATGACCTCATCATTGTTCTTTCTTGTTGCCTTTGCACTTCCTAATGTCCATGCAAACATTAGCTCCTCATGGAGATATGCAGCTCATAACAACGTTGGAAGAGACAACAAGATGGTTAACCTCGAGCACAACCACCCCGTCTTTGGGCCTGGTCCATGGAGGCTAGCCCATGCTACCTTCTATGAGGGAGGTTCCGGAACATTTGGAGGAGCTTGTGGGTATGAGGATGTGGTTAAAGAAGGTTATGGCCTAGACACGGCAGCACTGAGCACAGTTTTGTTCAAGCAGGGTCAGACATGTGGGGCATGTTATGAGATCAAATGTGTAGACTCTCCTCAGTGGTGTAAGGCAGGCCAACCCTCTATTTTTGTCACCGCAACAAACCTTTGTCCTCCCAATTATTCTCAATCCGGTGACAATGGAGGATGGTGCAACCCACCACGCGAGCACTTTGATTTAGCCAAACCTGCATACCTCAAAATTGCAGCATACAAGGCTGGCATCGTGCCAGTCCAATATCGCAGGATACCGTGCAAGAAGCAAGGTGGTATTCGGTTCACTATCACTGGAAATCCTTACTTCAATCTAATAAAAGTGTGGAATGTTGGAGGAGCTGGGGACATCACAGCAGTACACGTGAAGGGTGACAAGACCAATTGGATAGAATTGAAGCGAAATTGGGGTCAGAAATGGGCGACTAATGCCATGTTAGTGGGAGCGACATTGACCTTGAGGGTGAGAGCTAGTGATGGCAGGTACTCCACTTCATTGAATGTTGTCCCCCACAATTGGCAATTTGGTCAGACCTTTGAAGGCAAAAACTTCGCATAA 855 0.4784 MAFPLGALMTSSLFFLVAFALPNVHANISSSWRYAAHNNVGRDNKMVNLEHNHPVFGPGPWRLAHATFYEGGSGTFGGACGYEDVVKEGYGLDTAALSTVLFKQGQTCGACYEIKCVDSPQWCKAGQPSIFVTATNLCPPNYSQSGDNGGWCNPPREHFDLAKPAYLKIAAYKAGIVPVQYRRIPCKKQGGIRFTITGNPYFNLIKVWNVGGAGDITAVHVKGDKTNWIELKRNWGQKWATNAMLVGATLTLRVRASDGRYSTSLNVVPHNWQFGQTFEGKNFA* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0240 284 SUPERFAMILY Barwin-like endoglucanases 60 209 IPR036908 -
Apr4g0240 284 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 77 191 IPR007112 -
Apr4g0240 284 Gene3D - 190 283 IPR036749 -
Apr4g0240 284 SUPERFAMILY PHL pollen allergen 188 280 IPR036749 -
Apr4g0240 284 Gene3D - 45 187 IPR036908 -
Apr4g0240 284 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 280 IPR007117 -
Apr4g0240 284 PANTHER EXPANSIN-A32 10 283 - -
Apr4g0240 284 SMART dpbb_1 94 181 IPR007112 -
Apr4g0240 284 Pfam Expansin C-terminal domain 192 269 IPR007117 -
Apr4g0240 284 Pfam Lytic transglycolase 94 181 IPR009009 -
Apr4g0240 284 PRINTS Expansin signature 89 103 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 116 127 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 130 140 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Apr4g0240 284 PANTHER EXPANSIN-A15 10 283 IPR002963 GO:0009664
Apr4g0240 284 PRINTS Expansin/Lol pI family signature 60 75 IPR007118 GO:0005576
Apr4g0240 284 PRINTS Expansin/Lol pI family signature 98 116 IPR007118 GO:0005576
Apr4g0240 284 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Apr4g0240 284 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Apr4g0240 284 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0240 Apr-Chr4 2029481 2031395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0240 55 283 Miscellaneous Gene Families AT5G02260 64.069 2.13e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0240 - - gmx:100800424 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0240 4 2029481 2031395 Apr4g0240 4 2029481 2031395 ECH