Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0239 ATGGTGAAGGCCTACCTCCGATACGAGCCGGCGTCGTCGTTCGGAGTGATAGCGTCGGTGGACTCAAATATTGCATACGACAGCTCCGGAAAACACCTCTTCTCTCCGGCACTCGAGAAGATCGGCATTTGGCACGTGCGGCAAGGTCTCTGCACCAAAACCCTAACTCCTTCCACTCCGTCGCGTGGTCCTTCCCTCGCCGTCACCTCCATTGCATCCTCCCCTTCCTCCTTGATTGCTGGTGGTTATGGTGATGGTAGCATTAGGATTTGGGACTCTGATAAAGGAACGTGCGAGACTACCTTAAATGGACACAAGGGAGCTGTCACTGCTCTTCGTTACAACAAGGCGGGTTCTTTGCTCGCTTCTGGCAGTAAGGATAATGATGTTATATTATGGGATGTGGTTGGCGAGACCGGGCTCTTTCGCCTTTGCGGTCATCGCGATCAGGTGACTGATGTTGTTTTTGTAAGTTCTGGGAAAAAGCTTGTTACTTCCTCCAAAGACAAGTTCTTGAGAGTGTGGGATCTTGATACCCAACACTGTATGCAAATTGTTGGTGGCCATCACAGTGAAATATGGTCCGTGGACATTGATCTGGATGAAAGATATCTTGTCACCGGTTCTGCAGATAAGGAGCTTCGTTTTTATGTGATCAAGCACGACTCTGGGGATGGGGAGTCTAAAAATGATGGTGGAGATTTGTCCGTTCAAAATAAATGGGAAGTTTTGAGGCATTTTGGTGAAATTCAGCGGCAGAGCAAGGATAGGGTTGCAACAGTGCAGTTCAGCAGGTCAGGGAATCTGCTAGCTTGCCAAGTTGCTGGAAAGACAGTAGAAATATACCGTGTATTGGATGATGCTGAAGCAAAGCGAAAAGCAAAACGAAGGGTTCACCGTAAGAAAGAGAAGAAACATGCAAAAGAGGCTTTGGAGGGAACAGAAAACGGAGACACAACCATAGAAACTAGTAACCCCACAGTTATTGTGCCTGATGTTTTTAAGCTGTTGCATACTATTAGGGCTAGCAAAAAGATATGCTCCATTTCTTTCTGTCCAATCACTCCAAAGAATTCACTGGCTAGTTTAGCATTGTCCTTGAACAATAATCTGCTTGAGTTTTACTCTATTGAACATGGTGAAACCAAAAAAACACTTGCTATTGATCTTCAAGGGCATCGTTCTGATATTAGAAGTGTCACGCTTAGTTCAGACAACACTTTTCTGATGTCAACCAGTCACAATGCAGTAAAGATTTGGAACCCAAGCACTGGCTCTTGCCTAAGGACCATTGATTCTGGGTATGGACTATGCAGTTTAATTCTTTCCACTAACAAGTATGGACTTGTTGGAACTAAAGATGGAACCTTAGAAATTATTGACATTGGAAGTGGCACTTGTCTTGAAGTAATGGAAGCTCATGGTGGTTCTGTTCGCACAATTGCTGCCTTACCAGATAGAAATGGGTTTGTCACAGGAAGTGCAGATCATGATGTTAAGTTTTGGGAGTACAAGCAAAAACTTGGTCAAGCTACTAAGCAACTCATTGTGTCAAATGTCAGTACTATGAAAATGAACGATGATGTTCTTGTGGTTGCAATTAGCCCTGATGCTAAATATATTGCTGTTGCTCTCTTGGATAGTACTGTGAAGGTTCACTTTGTGGACACATTCAAATTCTTCCTTTCATTATATGGCCACAAGCTGCCTGTTCTGTGTATGGATATCTCATCAGATGGAGATTTAATTGTGACTGGTTCTGCAGATAAAAATTTAAAGATCTGGGGCTTGGACTTTGGGGACTGTCATAAATCCATTTTTGCGCATTCTGACAGTGTTATGGCAGTGCGATTTGTTCCCAAGACACATTATGTGTTCAGTGTTGGAAAAGATCGCCTAGTAAAATATTGGGATGCTGATAAATTTGAGCTGCTGCTGACTCTCGAAGGACATCATGCTGATGTTTGGTGTCTTGCTGTTAGTAATCGAGGTGATTTTATTGTCACTGGATCTCATGATCGTTCCATCCGTCGGTGGGATCGTACTGAAGAGCAATTTTTCATTGAGGAAGAAAAGGAGAAAAGGTTAGAGGAAATGTTTGAGGCTGATCTTGACAATGCATTTGAAAACAAGTATGCACCAAAGGAAGAAATACCAGAGGAGGGAGCTGTGGCTTTAGCTGGGAAAAAAACCCAGGAAACCCTTACTGCAACTGACTTAATTATTGAGAGATTAGACATTGCAGAAGATGAAAAAAAGCGTATTGCAGAACATCAGGAGGAGAAAAATAACAGAAATGTTGTTGATTTCCAAGCAAATCCTCTGATGAATGGGCTTTCACCTTCTGACTATGTTTTAAGTGCATTTTCAGATGTGCATTCCAATGATTTGGAACAAACGTTATTGGCTTTACCATTTTCAGATGCTTTGAAGCTTCTGTCATACTTGAAAGACTGGAGTTCATATTCTGACAAGGTTGAGCTTGTTTGCAGGATAGGTACGCTGCTCTTGCAGACACATTACAACCAGTTACTTACCACTCCTGCTGCCCGACCCATCTTGACTGTTTTCAGTGGCATTTTTTATGAACGGGTCAAGGGATGGAAAGATATATTTGGTTTTAACCTTGCAGCAATGGAACATATTCAGCAAATGATGGCTTCAAGATCAGATGCTTTATTTCATGATGCAAGATCAAAACTGCTAGAGATACGTGCTCGACAATCCAAACGTATAGAAGAAAGGTCGGATACTGGAGAAGTGAAGCGGAGGAAGAAGAAGAAGACATAA 2790 0.4269 MVKAYLRYEPASSFGVIASVDSNIAYDSSGKHLFSPALEKIGIWHVRQGLCTKTLTPSTPSRGPSLAVTSIASSPSSLIAGGYGDGSIRIWDSDKGTCETTLNGHKGAVTALRYNKAGSLLASGSKDNDVILWDVVGETGLFRLCGHRDQVTDVVFVSSGKKLVTSSKDKFLRVWDLDTQHCMQIVGGHHSEIWSVDIDLDERYLVTGSADKELRFYVIKHDSGDGESKNDGGDLSVQNKWEVLRHFGEIQRQSKDRVATVQFSRSGNLLACQVAGKTVEIYRVLDDAEAKRKAKRRVHRKKEKKHAKEALEGTENGDTTIETSNPTVIVPDVFKLLHTIRASKKICSISFCPITPKNSLASLALSLNNNLLEFYSIEHGETKKTLAIDLQGHRSDIRSVTLSSDNTFLMSTSHNAVKIWNPSTGSCLRTIDSGYGLCSLILSTNKYGLVGTKDGTLEIIDIGSGTCLEVMEAHGGSVRTIAALPDRNGFVTGSADHDVKFWEYKQKLGQATKQLIVSNVSTMKMNDDVLVVAISPDAKYIAVALLDSTVKVHFVDTFKFFLSLYGHKLPVLCMDISSDGDLIVTGSADKNLKIWGLDFGDCHKSIFAHSDSVMAVRFVPKTHYVFSVGKDRLVKYWDADKFELLLTLEGHHADVWCLAVSNRGDFIVTGSHDRSIRRWDRTEEQFFIEEEKEKRLEEMFEADLDNAFENKYAPKEEIPEEGAVALAGKKTQETLTATDLIIERLDIAEDEKKRIAEHQEEKNNRNVVDFQANPLMNGLSPSDYVLSAFSDVHSNDLEQTLLALPFSDALKLLSYLKDWSSYSDKVELVCRIGTLLLQTHYNQLLTTPAARPILTVFSGIFYERVKGWKDIFGFNLAAMEHIQQMMASRSDALFHDARSKLLEIRARQSKRIEERSDTGEVKRRKKKKT* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0239 929 Gene3D - 509 739 IPR015943 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Apr4g0239 929 Coils Coil 745 765 - -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 648 680 IPR001680 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 102 135 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 144 176 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 643 680 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 390 421 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 96 134 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 62 92 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 181 217 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 562 595 IPR001680 GO:0005515
Apr4g0239 929 Pfam WD domain, G-beta repeat 465 502 IPR001680 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 605 IPR001680 GO:0005515
Apr4g0239 929 MobiDBLite consensus disorder prediction 294 320 - -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 179 - -
Apr4g0239 929 Gene3D - 8 220 IPR015943 GO:0005515
Apr4g0239 929 CDD WD40 390 680 - -
Apr4g0239 929 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 23 505 IPR011047 -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 217 IPR001680 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 101 IPR001680 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 102 135 - -
Apr4g0239 929 SUPERFAMILY Nucleoporin domain 334 685 - -
Apr4g0239 929 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Apr4g0239 929 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Apr4g0239 929 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Apr4g0239 929 PRINTS G protein beta WD-40 repeat signature 583 597 IPR020472 -
Apr4g0239 929 CDD WD40 98 503 - -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 606 638 - -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 598 - -
Apr4g0239 929 SMART WD40_4 48 92 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 599 638 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 383 421 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 641 680 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 464 503 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 424 461 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 557 596 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 240 283 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 137 176 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 95 134 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 516 554 IPR001680 GO:0005515
Apr4g0239 929 SMART WD40_4 179 218 IPR001680 GO:0005515
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 503 IPR001680 GO:0005515
Apr4g0239 929 PANTHER WD REPEAT CONTAINING PROTEIN 3 WDR3 1 928 - -
Apr4g0239 929 Pfam Dip2/Utp12 Family 783 883 IPR007148 -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 648 680 - -
Apr4g0239 929 PANTHER WD REPEAT-CONTAINING PROTEIN 3 1 928 - -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 503 - -
Apr4g0239 929 ProSiteProfiles Trp-Asp (WD) repeats profile. 606 647 IPR001680 GO:0005515
Apr4g0239 929 Coils Coil 285 305 - -
Apr4g0239 929 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Apr4g0239 929 Gene3D - 236 507 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0239 547 689 Miscellaneous Gene Families AT5G08390 26.573 1.13e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0239 K14556 - gmx:100775810 1659.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0239 4 2020636 2028875 Apr4g0239 4 2020636 2028875 ECH