Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0234 ATGGCAGTAACCTCAACATCACTCGCTTCTCAACTCTCCATTGGCCTTCGCCGTCCTTCTTTCAATTCTCAACCACTCTCTGCCAATCAATCTTTCTTCCACACCCTTCATTCCAATCTTCGTATATCCCTTTCTCATGCCAAACCCTCCCGTGCCGTCGTCGCCATGGCTGGTTCTGGCAAGTTTTTCGTTGGTGGCAACTGGAAGTGTAATGGAACAAAAGACTCCATCAGTAAGCTTGTCTCTGACTTGAACAGTGCCACATTGGAGCCTGATGTTGATGTTGTTGTTGCACCTCCCTTTTTGTACATCGATCAGGTAAAAAACTCAATTACTGATCGGATTGAAATCTCTGCCCAGAATTCTTGGGTGGGAAAAGGTGGTGCCTTCACTGGAGAAATCAGTGTGGAACAACTGAAAGACCTTGGATGCAAGTGGGTTATTCTTGGACATTCTGAGCGAAGACATATTATTGGAGAAAATGATGAGTTTATAGGAAAGAAAGCTGCCTATGCTTTGAGCCAGGGTCTTGGAGTGATTGCATGCATTGGAGAATTGTTAGAAGAAAGGGAGGCTGGGAAAACTTTTGATGTTTGTTTTCAGCAATTGAAGGCTTTTGCAGATGCAGTTCCTAGTTGGGATTATATTGTTATTGCATATGAACCTGTCTGGGCCATTGGAACTGGCAAAGTGGCCACACCCCAGCAAGCTCAGGAAGTACATATAGCTGTTCGGGGTTGGCTAGAAAAGAATGTCTCAGCTGAAGTTGCATCTAAAACGCGAATTATTTATGGAGGATCTGTAAATGGGGGCAACAGTGCTGAGCTTGCAAAGCAAGAAGATATTGATGGATTTCTTGTTGGAGGTGCTTCATTAAAGGGTCCTGAGTTTGCTACCATTGTGAATTCAGTCACATCAAAGAAAGTTGCGGCTTGA 936 0.4423 MAVTSTSLASQLSIGLRRPSFNSQPLSANQSFFHTLHSNLRISLSHAKPSRAVVAMAGSGKFFVGGNWKCNGTKDSISKLVSDLNSATLEPDVDVVVAPPFLYIDQVKNSITDRIEISAQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHIIGENDEFIGKKAAYALSQGLGVIACIGELLEEREAGKTFDVCFQQLKAFADAVPSWDYIVIAYEPVWAIGTGKVATPQQAQEVHIAVRGWLEKNVSAEVASKTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0234 311 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 1 309 - -
Apr4g0234 311 Hamap Triosephosphate isomerase [tpiA]. 60 303 IPR022896 GO:0004807|GO:0006096
Apr4g0234 311 Pfam Triosephosphate isomerase 63 303 IPR000652 GO:0004807
Apr4g0234 311 SUPERFAMILY Triosephosphate isomerase (TIM) 59 304 IPR035990 GO:0004807
Apr4g0234 311 ProSitePatterns Triosephosphate isomerase active site. 219 229 IPR020861 GO:0004807
Apr4g0234 311 Gene3D Aldolase class I 41 310 IPR013785 -
Apr4g0234 311 PANTHER TRIOSEPHOSPHATE ISOMERASE 1 309 IPR000652 GO:0004807
Apr4g0234 311 CDD TIM 62 302 IPR000652 GO:0004807
Apr4g0234 311 TIGRFAM tim: triose-phosphate isomerase 63 293 IPR000652 GO:0004807
Apr4g0234 311 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 61 303 IPR000652 GO:0004807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0234 Apr-Chr4 1971087 1975567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0234 K01803 - gmx:100819824 540.421