Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0223 ATGGAGAATCCGTCTGAATTGCACCACCACGACGAAAACGATATTGCAGCTGCAGAATATGGAGTCGCCGATGAGGAAGAAAATGACGATGAAGAAGACGAGGATGAAGACGATGAAGAATACGTCCCCGCTGCGTGGTCTTCTAGGGTTTCTCACTACGCTTCTCATAGCCCTATCACAAACGAAGTAATTGTCATCGCCGATGAATCGCAGAATAGCGTGGAAGAGGAGAGAAACAAACGGCGCAGAACCGAAGGAGGCGAGGCTTCTTGTTCTTTCGCAAGTGGTAGCAGCGACGGTAGCCAAGGGAATGAGTGGAACCGCACCGACATTGATGGCCTCATTTGCCCTATTTGCATGGACGTTTGGACCAATGACGGCGAACATCACATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCATGTATCAACAAATGGCTTCAACAGAGAAGAAACTCGGGGAAGTGTCCTCAATGTAATAGGAAATGTTCGTTGAACGATGTGAGGAAACTCTATGCTTCCCGAGTAGTTGCCGTTGATGAAGAATCTCAGAAGAGAATTCGTGGCCTCGAGGCCAAATGTGTTGCCCTTGAAAGTGAGGGCAGTGATTGGCACAAGAAAGAAGCCAGATGGCAGAAAACAGAAGCTGCATTGCGTGCCCAAGTTCAAAAGCTTACAGAGAGAAACACTTATTTGGAGCAGCTGCTACTAGATATGCAGAGCAGGCAATCTGATTTGATAAATGGCAATGGAAACTCTCAATGGAGATGTGAATCTGAACACAACTTTGGCCCAAATCACCATGGAGGGGGATCCTTTCGCAATTTTGAATTGCAGAAAGTGTTTCATCTGGACGGTGCACGTGTATTTGATATGGACATTTCTAATCAAATTTTGTTAGTTGCACAAAAGCCAAAGGCGATCGGTGGAATACATTTGCTAACTAAAATGAGCTTGATATCTCCGTTTGAGATGCAAGATATCTTACTGCCCTCCGGTACAAATGGTGTTAAAGACCTACATATTTCTCCTTCTAATAGTGGCTTGGCCCTCTATGCTTCATTTGGGAAGAAATTATCAGTGGTCAGCTTGGACAGTAGCAACCCTGTTATCAATTATGATCTACAGGATCCAGCATGGTCTTGTTCGTGGGATCTCAACAGTTCACATTACATATATGCTGGACTACAGAATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGGCCCATGAAATGTTTAGTTGGGTTGACTAACAACCCTGTTCATACTGTACAATCTCTTGCACAAACTTCGGGTTTTCCTTCTGGTGTTAAAACCATCCTTTCTGCATCTGCCATTGGCATTTGTCAGTGGAATGTTGATTCTGAAGAACGGCCACTTATGGTTCCTGAAACTGATAATCAAGGAGTTTGTATATCCCTTGCCTATTGTCCCAGCAGCGATGACATTGTTGGTTCTTACCGTCCAAAATTTGACATGTCCATGGATGTGCCTCTATCTCAACCATCGCCCACTCCATATACTACTGGACAAGTGGTGCAGGGCTCTCATGTCTTGTTCAATGGAATGGGAAGTCATCGTTTCCAAAAGGTGGGTTCCTCATATGCCAATGTAAATAAAATTCGACTACCAAAATGTGTAATTATAGACATAGAGAATCAGAGTAGATTTTTTGCATCTGGGGATGAAGTTACATGTGATTTGGTCTTGCATGAGTTGCCTTCTTTTAGAGTTCTTCAGCAATTCAAGATGCCAGCTCAGGCCCGTGATCTTAGGTACTCACCTAGCCGTGGAATACTTGGTTGTTTAAGTGAGAATACATTGCAGCTCTTCAAAGCCAAACTCTCGTGA 1866 0.4416 MENPSELHHHDENDIAAAEYGVADEEENDDEEDEDEDDEEYVPAAWSSRVSHYASHSPITNEVIVIADESQNSVEEERNKRRRTEGGEASCSFASGSSDGSQGNEWNRTDIDGLICPICMDVWTNDGEHHICCLPCGHIYGMSCINKWLQQRRNSGKCPQCNRKCSLNDVRKLYASRVVAVDEESQKRIRGLEAKCVALESEGSDWHKKEARWQKTEAALRAQVQKLTERNTYLEQLLLDMQSRQSDLINGNGNSQWRCESEHNFGPNHHGGGSFRNFELQKVFHLDGARVFDMDISNQILLVAQKPKAIGGIHLLTKMSLISPFEMQDILLPSGTNGVKDLHISPSNSGLALYASFGKKLSVVSLDSSNPVINYDLQDPAWSCSWDLNSSHYIYAGLQNGSVLVFDMRQTAGPMKCLVGLTNNPVHTVQSLAQTSGFPSGVKTILSASAIGICQWNVDSEERPLMVPETDNQGVCISLAYCPSSDDIVGSYRPKFDMSMDVPLSQPSPTPYTTGQVVQGSHVLFNGMGSHRFQKVGSSYANVNKIRLPKCVIIDIENQSRFFASGDEVTCDLVLHELPSFRVLQQFKMPAQARDLRYSPSRGILGCLSENTLQLFKAKLS* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0223 621 SUPERFAMILY WD40 repeat-like 333 616 IPR036322 GO:0005515
Apr4g0223 621 Pfam Ring finger domain 116 162 IPR001841 -
Apr4g0223 621 MobiDBLite consensus disorder prediction 90 105 - -
Apr4g0223 621 MobiDBLite consensus disorder prediction 1 52 - -
Apr4g0223 621 Coils Coil 182 202 - -
Apr4g0223 621 MobiDBLite consensus disorder prediction 71 87 - -
Apr4g0223 621 MobiDBLite consensus disorder prediction 18 41 - -
Apr4g0223 621 SUPERFAMILY RING/U-box 107 167 - -
Apr4g0223 621 CDD mRING-C3HGC3_RFWD3 112 162 - -
Apr4g0223 621 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 11 617 - -
Apr4g0223 621 MobiDBLite consensus disorder prediction 68 105 - -
Apr4g0223 621 Gene3D - 257 499 IPR015943 GO:0005515
Apr4g0223 621 ProSiteProfiles Zinc finger RING-type profile. 116 162 IPR001841 -
Apr4g0223 621 SMART ring_2 116 161 IPR001841 -
Apr4g0223 621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 228 IPR013083 -
Apr4g0223 621 MobiDBLite consensus disorder prediction 1 17 - -
Apr4g0223 621 PANTHER RFWD3 PROTEIN 11 617 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0223 K15691 - gmx:100818898 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0223 4 1896384 1901244 Apr4g0223 4 1896384 1901244 ECH