LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g0207	ATGTTTTGTTCATCTCCATCGTTTCCTTCTTCTTCTCCTTCACCTTTAGTAATGATGCTCCATGAACAAGCTGCTCCTGCGGTTGCCTCATGGTTTTCTAGTTTTGCATCTCAGCATTTTCCTACCTCGGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTGTACTTCACGTCAATAATAAGGAGGCTACATTAAATACAAGGCAGATGGATATGGCCTTAGTTCATGAGAAAAGTAACATTGGCAATGCTGATCAGTTAGTGCATGACTTTATCCAGCAGTTGCATCTCAGGTCTCATTTACAGAACGTTTGTCTTTTTATAGGGTGCATGGATTGTATGGTGTCTTGCAGATGGACTTGTTCTCCAACTAGGGAAATTGCTGCTTTTTTGACTCCTAGGCCTGTTGATATTGATTCAGAGAGGCCTGCGGATGGTCAGCCGGGGATTGTGTTCTCTCTTGCTGAGCAAGCTTTGTTAGCCTCAAAACAAGCAGCTTCAATAGCTGCAGCGATGAAATCAATTAAGGCTGACGATGATGATCCACTTCCTTCTTGTCTGGACTTCTCAAGTTTGGCTGACTCTTCAGTCGAAAAGAATAAGATTGTGAGGTCTACACGAATTATAAAAAGACGATCTAAACAGAGAAAAGTATCGAAGTTAAAACTTCTTGATGAAGGAAGTTACTTTCCAAGAAAGGCTGATGTACGGGGAAGGTTACATGTAGAAAAGAAGCTAAAAGATGGGTTTGATCAAAATGACCCTGTGCGCTCGTTCTTGTCAGTTCCTGAATCAAAGCAACTATTGACCCTTGAAGAAGAGGCTCAATTGATTACTCAGCTACAGGATTTATCAAGATTGGAAAAAGTAAAGATCAGGCTTCAATCTCAGCTCGGGCGGGAACCAACTTTGGTTGAATGGGCTGATGTTGTTGGCCTTAGTTGTTATGCCTTGCAGATGCAGCTTCATCGTGGTAGTAGAAGCAAAGAAAAGCTGGTTCACGCCAATTTACGCATGGTAGTTCACATTGCTAAACATTATCAAGGGCATGGCCTCAGCCTTCAGGACATGTTGCAGGTGGGAAGTACAGGCCTCATAAAGAGCATTGAAAAGTTTAAACCTGCATCTGGTTGCCGGCTTGGTACTTATGCATACTGGTGGATAAGGCATACAATAAGGAAGGCCATATTTCTAAATTCCCGGGTGATCCGTTTGCCGGAGAATTTATACAGTCTTCTGGGCAAGGTCAAAGAAGCAAAAAAATTGTACATTCGACAAGGAAATCTGCGCCCCACCAAAGAAGAAATAGCAGGAAGGGTAGGAATTTCAGTAGAAAAGTTGGAAAAATTGCTATATGCTGCAAGAACTCCAATTTCAATGCACCAAACCGTGTGGGCAGACCAAGATAAGACTTACCAGGAGATTACTGCGGATCCTTCAATTGAAATCCCTGAAGTGAGTGTTGCAAAACAGCTAATGAGGAGGCATGTGCGAAGCCTCCTAAATATCTTAAGCCCAAAAGAAAAGAGGATAATCATGCTAAGATTTGGTATTGAGGATGGCTACGAGAAAACTTTGTCAGATATTGGCAGGGTATTTGGTTTGTCCATGGAGAGGGTCCGGCAGTTGGAGAGCCGAGCATTGTCCAAGCTCAGGCAGTGCATTGTCAGTCAAGAACTTAAAACATATGTAGACTTGATTGTATAG	1710	0.4257	MFCSSPSFPSSSPSPLVMMLHEQAAPAVASWFSSFASQHFPTSVLLQEQRDEYRPVLHVNNKEATLNTRQMDMALVHEKSNIGNADQLVHDFIQQLHLRSHLQNVCLFIGCMDCMVSCRWTCSPTREIAAFLTPRPVDIDSERPADGQPGIVFSLAEQALLASKQAASIAAAMKSIKADDDDPLPSCLDFSSLADSSVEKNKIVRSTRIIKRRSKQRKVSKLKLLDEGSYFPRKADVRGRLHVEKKLKDGFDQNDPVRSFLSVPESKQLLTLEEEAQLITQLQDLSRLEKVKIRLQSQLGREPTLVEWADVVGLSCYALQMQLHRGSRSKEKLVHANLRMVVHIAKHYQGHGLSLQDMLQVGSTGLIKSIEKFKPASGCRLGTYAYWWIRHTIRKAIFLNSRVIRLPENLYSLLGKVKEAKKLYIRQGNLRPTKEEIAGRVGISVEKLEKLLYAARTPISMHQTVWADQDKTYQEITADPSIEIPEVSVAKQLMRRHVRSLLNILSPKEKRIIMLRFGIEDGYEKTLSDIGRVFGLSMERVRQLESRALSKLRQCIVSQELKTYVDLIV*	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr4g0207	569	ProSitePatterns	Sigma-70 factors family signature 2.	526	552	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	Gene3D	-	406	483	IPR036388	-
	Apr4g0207	569	PANTHER	RNA POLYMERASE SIGMA FACTOR RPO	14	569	-	-
	Apr4g0207	569	Pfam	Sigma-70, region 4	501	554	IPR007630	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	406	479	IPR013324	-
	Apr4g0207	569	PANTHER	RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED	14	569	-	-
	Apr4g0207	569	Pfam	Sigma-70 region 2	333	397	IPR007627	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	SUPERFAMILY	Sigma3 and sigma4 domains of RNA polymerase sigma factors	466	565	IPR013324	-
	Apr4g0207	569	TIGRFAM	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	331	555	IPR014284	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	Gene3D	-	488	568	IPR036388	-
	Apr4g0207	569	Pfam	Sigma-70 region 3	413	486	IPR007624	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	SUPERFAMILY	Sigma2 domain of RNA polymerase sigma factors	253	402	IPR013325	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	Gene3D	-	218	402	-	-
	Apr4g0207	569	PRINTS	Major sigma-70 factor signature	357	370	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	PRINTS	Major sigma-70 factor signature	381	389	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	PRINTS	Major sigma-70 factor signature	505	517	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	PRINTS	Major sigma-70 factor signature	526	541	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	PRINTS	Major sigma-70 factor signature	541	552	IPR000943	GO:0003700\|GO:0006352\|GO:0006355
	Apr4g0207	569	CDD	Sigma70_r4	495	553	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g0207	Apr-Chr4	1730372	1735100	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g0207	-		-	gmx:100815699	771.155

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr4g0207	4	1730372	1735100	Apr4g0207	4	1730372	1735100	ECH