Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0187 ATGATGAACACAGCGAACGGCATGATGTCACCGTCGTCTTCATCGGCAACTGCACAGTCGCCTGGTCTCAAGACTTATTTCAAAACCCCCGAAGGTCGATATAAGCTTCAATACGAGAAAACTCACCCTTCTGGTCTTCTTCATTATGCGCATGGCAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCAGCGCCTTCGACCCCTACTGCGTCATCTTCGAGTTTTAGTGCCAGCAGTGGGGTAAGGTCCGCAGCAGCCAGATTGTTGGGAGGAAGCAATGGAAGCCGGGCACTTAGTTTTGTTGGAGGCAATGGTGGCAGCAAGAGCAATGGTGGAAACAGTAGGATTGGTTCCATTGGTGCTTCAAGTTCAAGTAATTTAATGGCTAATGCAAATTTTGATGGGAAAGGAACGTACTTGATCTTCAATGTTGGGGATGCAATTTTCATTAGTGATTTGAATTCTCAAGACAAGGACCCCATAAGGTCAATTCACTTCAGTAATTCGAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGTGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCACTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCTTGGGTGCCTGGAGGTGATGGTGCTTTTGTTGTTTCTCATGCTGATGGGAATTTGTACATATATGAAAAGAACAAGGATGGTGCCGGTGATTCTTCATTTCCAGTTATCAAAGATCAAACTCAATTTTCTGTTTCACATGCACGTTACAGTAAGAGTAATCCAATAGCCAGATGGCATATATGCCAGGGCTCAATCAACAGTATTTCTTTCTCGTTTGATGGGGTATACTTAGCAACTGTTGGACGTGATGGTTATTTGCGAGTGTTTGATTACTCAAAAGAACAGCTTATATGTGGTGGCAAAAGTTATTATGGTGCTTTGTTGTGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGGCATAATTCGTGGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCGTCACCAAATTCAGATGACAATGGAGAGACCATTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTGCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCCTTAAGGCGTCCACCTGGTGGATCCCCGACTTACAGTACTGGAAGCCAGTCAGCCCACTGGGACAGTGTTGTTCCATTGGGTACCTTGCAACCTGCTCCAAGTATGCGGGATGTTCCGAAAATCTCTCCATTGGTTGCTCACCGTGTGCATACCGAACCTCTCTCTGGCTTGATATTTACCCAGGAATCTGTACTCACTGCCTGCCGGGAGGGGCACATTAAAATCTGGATGAGACCCGGGGTTGCTGAGAGCCAATCAAGCAACTCTGAAACCTTGTTAGCTACTAGTCTCAAGGAGAAGCCTTCCCTTTCAAGCAAGATCAGTAATTCTAGCTACAAACAATGA 1641 0.4534 MMNTANGMMSPSSSSATAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNSRIGSIGASSSSNLMANANFDGKGTYLIFNVGDAIFISDLNSQDKDPIRSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGDGAFVVSHADGNLYIYEKNKDGAGDSSFPVIKDQTQFSVSHARYSKSNPIARWHICQGSINSISFSFDGVYLATVGRDGYLRVFDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSGVAFDSYWSSPNSDDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSAHWDSVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSNSETLLATSLKEKPSLSSKISNSSYKQ* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0187 546 MobiDBLite consensus disorder prediction 1 24 - -
Apr4g0187 546 MobiDBLite consensus disorder prediction 518 546 - -
Apr4g0187 546 PANTHER WD REPEAT PROTEIN 3 543 - -
Apr4g0187 546 SUPERFAMILY WD40 repeat-like 132 508 IPR036322 GO:0005515
Apr4g0187 546 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 377 IPR001680 GO:0005515
Apr4g0187 546 Pfam WD domain, G-beta repeat 298 326 IPR001680 GO:0005515
Apr4g0187 546 Pfam WD domain, G-beta repeat 343 368 IPR001680 GO:0005515
Apr4g0187 546 SMART WD40_4 212 258 IPR001680 GO:0005515
Apr4g0187 546 SMART WD40_4 329 368 IPR001680 GO:0005515
Apr4g0187 546 SMART WD40_4 287 326 IPR001680 GO:0005515
Apr4g0187 546 SMART WD40_4 472 509 IPR001680 GO:0005515
Apr4g0187 546 SMART WD40_4 371 423 IPR001680 GO:0005515
Apr4g0187 546 PANTHER LOW QUALITY PROTEIN: WD REPEAT-CONTAINING PROTEIN 20-LIKE 3 543 - -
Apr4g0187 546 Gene3D - 12 518 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0187 Apr-Chr4 1533131 1539533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0187 303 430 Miscellaneous Gene Families AT5G08390 22.656 8.97e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0187 K24741 - gmx:100782580 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0187 4 1533131 1539533 Apr4g0187 4 1533131 1539533 ECH