Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0159 ATGATAGATTTTGTGATCCTTGGCTCCTCCTCCATTGTCACTCCGCTTCCCAACCCACAACAACCACAACACCGCCACCCCATCAAACCCCACAAGCCTTCTGTCCCAAAGTTCGCTCCTTTTCCTTCTCCTCCTCCCTCTTCGCATTGGCCCATTTCCTGCACCCTCCATGCCCCCTCCACTCTCACCCACTGTGCTGACTCCCACCTCGCTCAAGAATTTCAAACGGTCATTGAAGACGTGCTCGATTCCGGGGTTGACTCTGAACTTCTCGCCAAGGTGGTTCTGTTGGGTATTCGAGCCAAGAAGGTTAGCACTGTGATTCACACTCTTAACAAAGTGAAGGGTCTTCACATTTCTCTGTCTACTCATCTTCATGGCTCTGACATCGATGCCATTGCCAAGGAGTGTTGTCACATGGTCATGTGTGGCCACATTGAGGAAGCTGTTGAATTCATGGAGGTTCTCGCACGTTTCCAATTATCAATCAGAGAAATTGTTCAGCCATCTGACGTAATAAAACGATGTGTTCTTAGTCGGAACCCAGTTTTAGCTGTTAGGTATGCAAGCCTTCTTCCACATGCACATATATTGTTCTACAACATTATATCTGAATTTGGCAAAAGGAGGGATTTAGCGTCTGCTCTGAAAGCATATGATGCAATGAAGAAAAACTTGAACAGTCCCAATATGTACATATACCGGGCAATAATTGACGCTTGTGGTCCATGTCGTGATTACAAGAAATCTAGGTACATATATGAGAATCTTGGTTTAAAACCAGATATGACAACCTATAACATCCTACTGAAAGCATGCTGTGTTGCTGGAAGAGTTGATCTAGCCCAAGACATTTATAAGGAACTTAAGCATTTGGAATCAGTGGGACAGATGAAATTAGATGTTTTTACCTACAGCACAATTATAAAGGTCTTTGCCGATGCAAAATTGTGGCAAATGGCTCTAAAAATCAAGCAAGACATGCTGTCTGCTGGTGTTTCTCTTAATACTGTTGCCTGGTCATCATTAATCAGTGCCTGCGCACATGCAGGGCTTGTAGAGCAGGCAATTCAGTTATTTGAAGAAATGCTTTTGGCTGGCTGTGAACCTAATACTCAGTGTTTCAACATCATTTTACATGCATGTGTTGAGGCTTGCCAATATGACAGGGCTTTTCGCTTTTTCCATTCTTGGAAGGAAAAAAAGATGTTGTGGTCCTTTGGTGAAGGCGACAATAGCAATTTAGAGCATGGAGGCATGGGTAATGCTACTACTAAGCCAAATGGAATTTTTAATTCGCACATTTTGAGGTTTGCTGAGAGGTTCCCTTTCATGCCAACTACCACAACATACAATATTTTACTGAAGGCCTGTGGTACCGATTACTACCATGCAAAAGCACTAATCAAAGAGATGAAAAGAGTAGGTCTTTCTCCAAATCAAATAAGTTGGTCAATTTTGATAGATATATGCGGAGAATCAGGAAATGTGGATGGTGCCATTGAGATTTTGGAAAACATGGGTGATGCTGGAATTAAACCTGATGTTATTGCATATACAACAGCCATTAAGGTTTGTGTTGAAAATAACAATTTTAAGCAAGCATTGACATTATATGAAGAAATGAAAAGCTATGAGATACATCCAAATTTGGTGACATATAACACACTTTTGAAGGCAAGGAGTAAATATGGCTCCCTACTTGAGGTGCAACAATGCCTGGCTATATACCAGGATATGCGAAAGGCGGGGTACAGACCCAATGACTACTATTTGGAAGAACTGATTGAGGAATGGTGTGAAGGAGTGATACAAGATAACAGAGAAAACCCAGGAGAATTTTCTTCCAGCAATAAATCTGAATCAGAAAGACCTCATAGTTTACTTCTTGAAAAAATTGCAGCACACCTGCTAAAGAGGATAGCTGACATCCTAGCGATTGATGTTCAAGGGCTCACAAAGGTTGAAGCTCGCTTGGTTATTCTTGCAGTTCTTCGAATGATCAAAGAGAATTATGCTTTAGGACATTCAGTGAACGATGACATCTTGATCATTATAGGAGCTACAAAAGCAGATGAAAATTCATCTGAACACTTATTAGAAGTGCAAGAGGCAATAATAAAACTTCTTAGGAATGAATTGGGGCTTGAAGTTCTTCCAGCCAGAACCAAATTTGCACTAACTGACACAGCAAAGATAGTGAGCCCCAACCTTTCAAATCTCAACATAGAAGCCTTGAAAGGAGAGAATGCATTACCCTCAACAATGGTGTGTCAGACAAGGAGACCTGCCGTTCTACTAAGGTTGAAGGTCACCAGAAAATCATTATACAATTGGTTGCGCAGGAAGTAA 2352 0.4145 MIDFVILGSSSIVTPLPNPQQPQHRHPIKPHKPSVPKFAPFPSPPPSSHWPISCTLHAPSTLTHCADSHLAQEFQTVIEDVLDSGVDSELLAKVVLLGIRAKKVSTVIHTLNKVKGLHISLSTHLHGSDIDAIAKECCHMVMCGHIEEAVEFMEVLARFQLSIREIVQPSDVIKRCVLSRNPVLAVRYASLLPHAHILFYNIISEFGKRRDLASALKAYDAMKKNLNSPNMYIYRAIIDACGPCRDYKKSRYIYENLGLKPDMTTYNILLKACCVAGRVDLAQDIYKELKHLESVGQMKLDVFTYSTIIKVFADAKLWQMALKIKQDMLSAGVSLNTVAWSSLISACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILHACVEACQYDRAFRFFHSWKEKKMLWSFGEGDNSNLEHGGMGNATTKPNGIFNSHILRFAERFPFMPTTTTYNILLKACGTDYYHAKALIKEMKRVGLSPNQISWSILIDICGESGNVDGAIEILENMGDAGIKPDVIAYTTAIKVCVENNNFKQALTLYEEMKSYEIHPNLVTYNTLLKARSKYGSLLEVQQCLAIYQDMRKAGYRPNDYYLEELIEEWCEGVIQDNRENPGEFSSSNKSESERPHSLLLEKIAAHLLKRIADILAIDVQGLTKVEARLVILAVLRMIKENYALGHSVNDDILIIIGATKADENSSEHLLEVQEAIIKLLRNELGLEVLPARTKFALTDTAKIVSPNLSNLNIEALKGENALPSTMVCQTRRPAVLLRLKVTRKSLYNWLRRK* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0159 783 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 255 775 - -
Apr4g0159 783 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 53 248 - -
Apr4g0159 783 TIGRFAM PPR: pentatricopeptide repeat domain 374 404 IPR002885 -
Apr4g0159 783 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Apr4g0159 783 TIGRFAM PPR: pentatricopeptide repeat domain 265 290 IPR002885 -
Apr4g0159 783 TIGRFAM PPR: pentatricopeptide repeat domain 338 372 IPR002885 -
Apr4g0159 783 TIGRFAM PPR: pentatricopeptide repeat domain 518 550 IPR002885 -
Apr4g0159 783 TIGRFAM PPR: pentatricopeptide repeat domain 482 516 IPR002885 -
Apr4g0159 783 Gene3D Tetratricopeptide repeat domain 60 294 IPR011990 GO:0005515
Apr4g0159 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Apr4g0159 783 Pfam PPR repeat family 336 382 IPR002885 -
Apr4g0159 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Apr4g0159 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 292 IPR002885 -
Apr4g0159 783 Pfam Pentatricopeptide repeat domain 503 560 IPR002885 -
Apr4g0159 783 Pfam Pentatricopeptide repeat domain 446 493 IPR002885 -
Apr4g0159 783 Pfam PPR repeat 258 288 IPR002885 -
Apr4g0159 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Apr4g0159 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 587 IPR002885 -
Apr4g0159 783 PANTHER OS03G0284900 PROTEIN 255 775 - -
Apr4g0159 783 PANTHER OS03G0284900 PROTEIN 53 248 - -
Apr4g0159 783 Pfam PPR repeat 303 333 IPR002885 -
Apr4g0159 783 Gene3D Tetratricopeptide repeat domain 295 420 IPR011990 GO:0005515
Apr4g0159 783 Gene3D Tetratricopeptide repeat domain 433 627 IPR011990 GO:0005515
Apr4g0159 783 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0159 193 609 Glycosyltransferase AT1G05670 22.146 3.68e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0159 - - aprc:113863304 1509.2