Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0144 ATGCCTCGCTATGATGATAAGTATGGTAATACCCGCCTCTACGTGGGTCGCTTGTCTTCCAGGACTCGTTCCCGTGATCTTGAGCGTGTCTTCAGCAGATATGGAAGAGTTCGAGCTGTGGATATGAAGCATGATTTCGCCTTTGTTGAATTTAGCGATCCTCGAGATGCTGATGATGCTAGATATAACTTGGATGGCCGTGATGTTGATGGAAGTCGTATTATTGTGGAGTTTGCCAAAGGGGGTCCTCGTGGTTCCCGGGAGTACTTGGGTAGGGGTCCGCCTCCTGGATCTGGACGCTGCTTTAACTGTGGTATTGACGGTCATTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATCGCTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGTAGGCGTGGAAGGAGTCATTCACGTTCACCGGTCCGGTCACGTTCTCCTCGACGTGGCAGAAGCCGAGATCGAAGCTACAGCCGAGACCGCAGCTACAGCCGATCAAGATCACCGGTCAGAAGAGAACGTAGCCCAGCTTCTGATGATAGATCACAGAGTCCTCAGCCCTCCAAGATAAGGAAGCATAGTCCATCACCTGACCAAAGCAGCCCACAGAAGAGAGGCGACACAGCTCCTGGTAATGATAGGGTGGTCACACAGCAAGATGGATCTGACTACAGTGATGGTCCTAGAGGGGGGAAGCGTAGAAGCCCTGCTAGCCCTGCTAGCCCTGCTAGGGATCGCAATGAGAGTGGCTATGATAGCCCTAAAGCTAATGGGCGTAGCCGCAGTCCCAGTCGGAGCCCTAGGGATGATGACAGGAGCCCCATCGATGAAGATGATGACAACAACCGCCACTCACAGTCACCTTGA 906 0.5188 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRVRAVDMKHDFAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGGPRGSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSHSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPVRRERSPASDDRSQSPQPSKIRKHSPSPDQSSPQKRGDTAPGNDRVVTQQDGSDYSDGPRGGKRRSPASPASPARDRNESGYDSPKANGRSRSPSRSPRDDDRSPIDEDDDNNRHSQSP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0144 301 MobiDBLite consensus disorder prediction 164 192 - -
Apr4g0144 301 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 7 286 - -
Apr4g0144 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Apr4g0144 301 MobiDBLite consensus disorder prediction 141 163 - -
Apr4g0144 301 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Apr4g0144 301 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Apr4g0144 301 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Apr4g0144 301 SMART rrm1_1 12 77 IPR000504 GO:0003723
Apr4g0144 301 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Apr4g0144 301 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Apr4g0144 301 MobiDBLite consensus disorder prediction 275 301 - -
Apr4g0144 301 MobiDBLite consensus disorder prediction 193 237 - -
Apr4g0144 301 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Apr4g0144 301 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Apr4g0144 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Apr4g0144 301 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 286 - -
Apr4g0144 301 Gene3D - 120 166 - -
Apr4g0144 301 Gene3D - 91 119 - -
Apr4g0144 301 MobiDBLite consensus disorder prediction 134 301 - -
Apr4g0144 301 Gene3D - 3 89 IPR012677 -
Apr4g0144 301 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0144 Apr-Chr4 1232278 1235799 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0144 K12896 - gmx:100813237 461.07