Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr4g0088 | ATGGAGAATCCTTCTGAGGTAGTTGGTTCCAAAGGGTTGATTAGAAAGCATGAATTTGTGAGGGTCATAATTCAATCTCTATATTCATTAGGATACAATAACACTGCATCATGCTTGGAGTCCGAATCTGGCATTTCATACAAATCCACAGAATTTCAGATGATTGAATCACATATACTGAATGGGAATTGGAGTGATTGCATTGATTATCTTAATTCTTTGAAGGATGTATTGGGTGAAACTATTGAATGTGTGATGTTTCTTGTATTGAAACAGCTTGTTGTGGAGTATATGAATCGGGGTGAGGATACTTTAGCTTTAGGTGTGTTACAGAAAGAGGTTTCAGTCTCGGATGTTGACAAGTACATCCTTGTAAATAGCATAATTTCATCGAAGGATAGGAAGTTAGGTGCAATTGATGACAACGGTGTACAAGATTTGCGAAGAAAGTTATTAAAAGATTTGGAAAATTTGTTGGCTCCACCCATTTCATTGCCTGGAGCCAGGCTGGAGTACTTAGTTGAAAGTACTGTTGCATTCTGGATTGATTCCTGTACATATCATAGTTCATCGAATCCAATTTCACTCTACGAGGATCATCGCTGTAGCAGGGATCATATTCCTACTACAACGACTCAGATATTGACTGCACATACAAATGAAGTTTGGGTTGTACAATTTTCTAATAGAGGGATGTACCTGGCCTCTTCATCCAATGATTGCACAGCCATCATATGGGAGATGCTGGAGGATTGGAAATTCAAATTGAAACACACACTTTCTGGTCACCGACTTGCGGTATCTTATGTAGCATGGAGTCCTGATGACACTAAATTGCTTACATGTGGGAACCTAGAAGTTTTGAAACTGTGGGATGTTGAAACAGGTACGTGCATGCACACATTTGGGAGTGAAAGCTTTGGTGTGAACTCTTGTGCCTGGTTTCCCGACTCAAAACACTTCATGGGTGGCAGTTCTCACAATGAAAGGGGCATTTGCGTGTGGAATTGTGATGGAAAAGAGGTCAGTGCATGGAAAGGAAGGAGGAAGCCCAAGGTTGTAGATGTTGCTATTACTCCGGATGGTGGGTATCTTATCAGCATATTCGTGGATCTACAAATTCGGATTCTGCATGTACCAACCAAAACTGAGCGAGTCATTGAAGAGGATTATGCAATGGCATCCCTTTCACTTTCAGGAGATGGTAAGTTCCTCATTGTCAATCTAAGCAGCCAGGAGATTCACATGTGGGATGTGGCCGGGAAATGGGATAAGCCCATGAAGTTTATGGGTCACAAGCAACAAAGATTTGCGATAAGGTCTTGCTTTGGTGGATTCAATAACTCATTTATTGCCAGTGGTAGTGAGAACTCACAGGTATACATTTGGAACTGGCGGCACTCCAATCCTATAGAGATTTTATGTGGGCACTCCGCGATTGTAAACTGTGTGAGCTGGAACCCCAAAATTCCACACATGTTGGCGTCTGCAAGTGATGATCATACGATTCGTATATGGGGACCCAGCTCAGCTTCTGATAAACAAGAAGGCAAACCCAGCTCAGCTTCTGATAAACAAGAAGGCAAATTGAGTGATTAG | 1599 | 0.4165 | MENPSEVVGSKGLIRKHEFVRVIIQSLYSLGYNNTASCLESESGISYKSTEFQMIESHILNGNWSDCIDYLNSLKDVLGETIECVMFLVLKQLVVEYMNRGEDTLALGVLQKEVSVSDVDKYILVNSIISSKDRKLGAIDDNGVQDLRRKLLKDLENLLAPPISLPGARLEYLVESTVAFWIDSCTYHSSSNPISLYEDHRCSRDHIPTTTTQILTAHTNEVWVVQFSNRGMYLASSSNDCTAIIWEMLEDWKFKLKHTLSGHRLAVSYVAWSPDDTKLLTCGNLEVLKLWDVETGTCMHTFGSESFGVNSCAWFPDSKHFMGGSSHNERGICVWNCDGKEVSAWKGRRKPKVVDVAITPDGGYLISIFVDLQIRILHVPTKTERVIEEDYAMASLSLSGDGKFLIVNLSSQEIHMWDVAGKWDKPMKFMGHKQQRFAIRSCFGGFNNSFIASGSENSQVYIWNWRHSNPIEILCGHSAIVNCVSWNPKIPHMLASASDDHTIRIWGPSSASDKQEGKPSSASDKQEGKLSD* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr4g0088 | 532 | Gene3D | - | 200 | 509 | IPR015943 | GO:0005515 | |
| Apr4g0088 | 532 | SUPERFAMILY | Telomeric repeat binding factor (TRF) dimerisation domain | 67 | 160 | IPR036507 | - | |
| Apr4g0088 | 532 | SUPERFAMILY | WD40 repeat-like | 205 | 506 | IPR036322 | GO:0005515 | |
| Apr4g0088 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 474 | 516 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | Pfam | WD domain, G-beta repeat | 212 | 246 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | Pfam | WD domain, G-beta repeat | 429 | 464 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | Pfam | WD domain, G-beta repeat | 255 | 292 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | Pfam | WD domain, G-beta repeat | 296 | 336 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | Pfam | WD domain, G-beta repeat | 469 | 506 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | MobiDBLite | consensus disorder prediction | 518 | 532 | - | - | |
| Apr4g0088 | 532 | SMART | ctlh | 48 | 105 | IPR006595 | - | |
| Apr4g0088 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 260 | 296 | - | - | |
| Apr4g0088 | 532 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 15 | 47 | IPR006594 | GO:0005515 | |
| Apr4g0088 | 532 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 234 | 248 | IPR019775 | - | |
| Apr4g0088 | 532 | CDD | WD40 | 212 | 506 | - | - | |
| Apr4g0088 | 532 | PANTHER | WD REPEAT PROTEIN 26-RELATED | 4 | 516 | - | - | |
| Apr4g0088 | 532 | PANTHER | OS02G0294600 PROTEIN | 4 | 516 | - | - | |
| Apr4g0088 | 532 | SMART | WD40_4 | 422 | 464 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | SMART | WD40_4 | 253 | 292 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | SMART | WD40_4 | 295 | 336 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | SMART | WD40_4 | 467 | 507 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | SMART | WD40_4 | 208 | 247 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | SMART | WD40_4 | 380 | 418 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | SMART | WD40_4 | 338 | 378 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 474 | 506 | - | - | |
| Apr4g0088 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 260 | 301 | IPR001680 | GO:0005515 | |
| Apr4g0088 | 532 | MobiDBLite | consensus disorder prediction | 505 | 532 | - | - | |
| Apr4g0088 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 215 | 248 | - | - | |
| Apr4g0088 | 532 | ProSiteProfiles | C-terminal to LisH (CTLH) motif profile. | 48 | 105 | IPR006595 | - | |
| Apr4g0088 | 532 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 215 | 248 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr4g0088 | Apr-Chr4 | 766665 | 769894 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr4g0088 | 213 | 366 | Miscellaneous Gene Families | AT5G08390 | 25.325 | 8.37e-10 | 59.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr4g0088 | K22382 | - | gmx:100818922 | 761.911 |
Event-related genes