Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0087 ATGACGGGATTTGCTAGGTCTCGTGATCACACCTCTTCTTCCCATAATTCAAACAGCAGTGGTAGCAATGTATTTAACTTGCTTGCAAGGAGAGAGATTTCGCCAAGGACAAAATATGTGGCAAAATGGCATTGGGTAGAAGCTTCAAAATCAAAATCTAGTTCTTGCTCTCGTCCTAAAAATGTAGTTGTGAGAGATGCAAGGCGTGGTCTCCTCTCATGGGTTGAGGCAGAGTCATTGCGGCATTTGTCAGCTAAGTATTGCCCTTTATTGCCTCCCCCACGTTCTACTATTGCAGCAGCATTTAGTCCAGATGGGAAAGTTCTTGCATCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGCCATAGGAGGACACCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCTAGTGGAAGCTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTACCGCCCCATTGCATCTATTGCTTTTCATGCCAAAGGGGAAATAATTGCTGTTGCATCAGGCCACAAGCTGTACATATGGCACTACAACAAGAAAGGTGAAGCGTCCTCACCAATATTTGTGTTGAAGACAAAGCGCTCACTTCGGGCAGTGCATTTTCACCCACATGCCGCACCATACCTTTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACCGAGGCAACATCTCTTGGTTACTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATATTCATCCTACAGAACATATTAGTTTGTCCAGTGAACTACCTGTGTCGTTACCTTTCTTCTTCACACCTTCATGTACTGTTGATGAGTCAAGAACAGAACTACAGCATGCTAGTCATGATGTTAGCTCAGATAGCATGCAAATCGAGTCTTCTGCCATGGTGCAGTTACAAGCAGACACAAATGCAACAGAGCAATATGATGTTACAGTGTCTCCCATGGATACATTCTCTGAGATGCCCACTAGTTCTCAAACTGCTACAGAATATCCTGCTCATGCTACTTTCTCTAATGGAATGAGAATTGGCCTCAGTAACCTCACAATGGATGATAGTATGGAGACTGATGAAGCCAGACCTGCTGAAGGAAGCCACCATGGGAACTCTACTAATTCCTATTCTCTTAATGGTGTGCTGCATGGACTATCTAGACAAAATGCAAACCGTGGAATTGTTTCAGAGTTTGGTCAATTTCATCAGCTTTTTCCTTCAAGAGACCCAAGTGGATGGGAGTTGCCTTTTCTTCAAGGGTGGTTAATGGGTCAAAGCCAAGTTAGCGTTCCCTCAATGCTTCCTCCCATGGGTGTTAGTCGTGACATTTTAGCTCAACAGATTGGTTCTTCCATTATGGCAGCTAATCTTTCCACCTCTAATGATGTAGCAATGCCATCTTCAGCAATACCTGGCAGCATCAGCATACCTGGTTCTTCTATGAGATCGGGTTTACGGAATCATTTTTCACAATCCCGTGTACCTGTATCTGAATCTGGCAATCTTGCTGCTTCTATTAATAGCCCACACGATGGATCCAATATCCAAACAATCATAAGTCGAATTCAGTCAGAACTTGCCCCATCAGTGGCTGCTGCAGCTGCTGCAGAGCTGCCTTGCACTGTGAAGTTAAGGGTATGGTCACATGACATAAAAAACCCCTGTGCCCCACTTAATGCTGACAGATGCCGTCTCACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCCCATTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGACCCAGGATTACAACCTCCAGTGCACCAAGAGCCTGGAGTTGCTACATCACCAACTCGGCATCCAATCTCAGCACACCAAGTTATGTATGAGCTGCGAATATATTCCCTTGAGGAGGCAACATTTGGATTGGTGCTTGCATCACGGGCAATTAGAGCAGCTCATTGTCTGACGTCAATTCAGTTCTCGCCTACATCTGAGCACATACTGCTTGCCTATGGTAGACGTCACGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCAATATATACAGTGTTAGAGGTATACAGAGTGTCGGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGGCTTGTTTATGGAACAAAGGAAGGAAAGCTTAGGGTCCTCCAGTATGATGGTGCTCATGCAGTGAGTGGCACTGGACCAAGTTACTTTTCTGAGGAGACCATCATTGGTGTCAGTCAGTGA 2400 0.4442 MTGFARSRDHTSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWVEASKSKSSSCSRPKNVVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPTEHISLSSELPVSLPFFFTPSCTVDESRTELQHASHDVSSDSMQIESSAMVQLQADTNATEQYDVTVSPMDTFSEMPTSSQTATEYPAHATFSNGMRIGLSNLTMDDSMETDEARPAEGSHHGNSTNSYSLNGVLHGLSRQNANRGIVSEFGQFHQLFPSRDPSGWELPFLQGWLMGQSQVSVPSMLPPMGVSRDILAQQIGSSIMAANLSTSNDVAMPSSAIPGSISIPGSSMRSGLRNHFSQSRVPVSESGNLAASINSPHDGSNIQTIISRIQSELAPSVAAAAAAELPCTVKLRVWSHDIKNPCAPLNADRCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQPPVHQEPGVATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVSGTGPSYFSEETIIGVSQ* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0087 799 Pfam WD domain, G-beta repeat 126 165 IPR001680 GO:0005515
Apr4g0087 799 Pfam WD domain, G-beta repeat 99 122 IPR001680 GO:0005515
Apr4g0087 799 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 174 IPR001680 GO:0005515
Apr4g0087 799 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 170 - -
Apr4g0087 799 MobiDBLite consensus disorder prediction 1 21 - -
Apr4g0087 799 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 2 798 - -
Apr4g0087 799 Gene3D - 74 254 IPR015943 GO:0005515
Apr4g0087 799 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Apr4g0087 799 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 2 798 - -
Apr4g0087 799 SMART WD40_4 734 774 IPR001680 GO:0005515
Apr4g0087 799 SMART WD40_4 168 205 IPR001680 GO:0005515
Apr4g0087 799 SMART WD40_4 84 122 IPR001680 GO:0005515
Apr4g0087 799 SMART WD40_4 125 165 IPR001680 GO:0005515
Apr4g0087 799 MobiDBLite consensus disorder prediction 384 404 - -
Apr4g0087 799 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 62 776 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0087 Apr-Chr4 754270 764048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0087 99 266 Miscellaneous Gene Families AT5G08390 25.414 8.21e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0087 - K17985 gmx:100817857 1381.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0087 4 754270 764048 Apr4g0087 4 754270 764048 ECH