Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0080 ATGGATGAAGAGGGAGACATATATGACGGTGTAAGAGCTCAGTTTCCTCTTTCGTTCGGAAAGCAAACTAAGTCTCAAACCCCTCTCGAAGCAATCCACAATGCTACACGTCGTTCCAACCCCAATCCCAACCCCAATCCCAATTCCAAATCCAAAACGACCAACCAACTTCCCTCTCTCTCTTCTTCTTCCCGGGAATGGCTCAATTCCCTCCGTCCCTCCAAAAACCCTACTCCTCCCCCGGCCGACGACAATCACGCCCCCATGGTGGGACCGCCTCCGCCACCGCCCCGATTCCGTTCTGCCGACGACGAGGAAGAGGACGACGATGGCGACATGATTGGCCCTCCCCCGCCGCCACCGACCGGGGCCGACTCCGAAGACGAATCGGACGAAGAGGATGTAGGGAACCGCTTCCGGATTCCCCTTAGCAACGAGATTGTGCTCAAAGGCCACACCAAGGTTGTGTCGGCTCTTGCTGTGGATCACTCTGGATCTAGAGTGCTTTCTGGAAGCTATGACTATACGGTACATATGTATGACTTTCAAGGAATGAATGCTCGTTTGCAATCGTTTCGACAGCTAGAGCCTTTTGAAGGTCATCAAGTTCGTAATTTAAGCTGGAGTCCAACTGCCGATCGATTTTTGTGCGTGACTGGATCAGCTCAAGCAAAGGTAGTGTGTGGCTTCATTATCTTCCCATTTCTTTTATGCTTCATTGCTCTTCCATTAACTGTGTCTATCTTCATTTTGCTGCAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTAACATGTGGAGAGTGGCATCCAAAAGCTAAAGAGACCATTTTAACATCGTCAGAGGATGGTTCACTACGCATATGGGATGTAAATGATTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGGGTTCCTGTGACTACATGTGCATGGGACCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCTATACAGATTTGGAATATTAAGCCTGGATGGGGGAGTAGGCCAGATATACATATTGAAAAAGGTCATGAGGATGATATTTCTGGTATGAAGTTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTCCGTAAAACAAAGGAATCATTGAAGGTATTTGAGGACCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTCTTGACTGGAACATCTGTGGAAAGGGAGAGCTCGACTGGAGGTTTATTGTGTTTTTTTGATAGAGCAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCCCCAACTTGTAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTGTTGGTGATAAAAGCCAAGGAGGGACTCACATACTATATGATCCAACCCTAAGTGAGAGAGGAGCTCTTGTATGTGTTGCTCGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTAATTCACAATCCTCATGCTTTACCACTATTTAGAGATCAGCCTAGCCGCAAGCGTCAGAGAGAGAAAATACTAAAGGATCCACTGAAGTCCCATAAGCCTGAACTGCCCATTACTGGTCCTGGCTTTGGTGGACGAGTTGGTGCAAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGCAAGGAGGTATGATCAAGGAAACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGCCAGTTTTTGCTAAGTCAGATTCTGAGGATGAAGAGAAATGA 1947 0.4581 MDEEGDIYDGVRAQFPLSFGKQTKSQTPLEAIHNATRRSNPNPNPNPNSKSKTTNQLPSLSSSSREWLNSLRPSKNPTPPPADDNHAPMVGPPPPPPRFRSADDEEEDDDGDMIGPPPPPPTGADSEDESDEEDVGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVHMYDFQGMNARLQSFRQLEPFEGHQVRNLSWSPTADRFLCVTGSAQAKVVCGFIIFPFLLCFIALPLTVSIFILLQIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKAKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDIHIEKGHEDDISGMKFSSDGRILLSRSFDGSLKVWDLRKTKESLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSTGGLLCFFDRANLELVSRVGISPTCSVVQCSWHPKLNQIFATVGDKSQGGTHILYDPTLSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKILKDPLKSHKPELPITGPGFGGRVGASQGSLLTQYLLKQGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEPVFAKSDSEDEEK* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0080 648 MobiDBLite consensus disorder prediction 627 648 - -
Apr4g0080 648 Gene3D - 42 228 IPR015943 GO:0005515
Apr4g0080 648 Gene3D - 260 506 IPR015943 GO:0005515
Apr4g0080 648 PRINTS G protein beta WD-40 repeat signature 298 312 IPR020472 -
Apr4g0080 648 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Apr4g0080 648 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Apr4g0080 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 313 - -
Apr4g0080 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 190 IPR001680 GO:0005515
Apr4g0080 648 MobiDBLite consensus disorder prediction 18 73 - -
Apr4g0080 648 SUPERFAMILY WD40 repeat-like 130 493 IPR036322 GO:0005515
Apr4g0080 648 Pfam WD domain, G-beta repeat 147 181 IPR001680 GO:0005515
Apr4g0080 648 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Apr4g0080 648 Pfam WD domain, G-beta repeat 333 359 IPR001680 GO:0005515
Apr4g0080 648 Pfam WD domain, G-beta repeat 371 405 IPR001680 GO:0005515
Apr4g0080 648 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 253 648 - -
Apr4g0080 648 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 4 227 - -
Apr4g0080 648 ProSitePatterns Trp-Asp (WD) repeats signature. 346 360 IPR019775 -
Apr4g0080 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 407 - -
Apr4g0080 648 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 183 - -
Apr4g0080 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 414 IPR001680 GO:0005515
Apr4g0080 648 SMART WD40_4 268 311 IPR001680 GO:0005515
Apr4g0080 648 SMART WD40_4 191 228 IPR001680 GO:0005515
Apr4g0080 648 SMART WD40_4 366 405 IPR001680 GO:0005515
Apr4g0080 648 SMART WD40_4 142 181 IPR001680 GO:0005515
Apr4g0080 648 SMART WD40_4 315 359 IPR001680 GO:0005515
Apr4g0080 648 MobiDBLite consensus disorder prediction 74 98 - -
Apr4g0080 648 ProSitePatterns Trp-Asp (WD) repeats signature. 298 312 IPR019775 -
Apr4g0080 648 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 320 IPR001680 GO:0005515
Apr4g0080 648 MobiDBLite consensus disorder prediction 1 135 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0080 239 478 Miscellaneous Gene Families AT5G08390 23.673 7.85e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0080 K24752 - gmx:100815380 1084.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0080 4 706409 711372 Apr4g0080 4 706409 711372 ECH