Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0076 ATGGAAAGGGAAGAAAATGGGTTGAAGGGTATGGATGCTGACCAACTGAGAGAGGAAGCTCATAAGATGGTTGACTTCATTGCCGATTACTACAAAACCATTCATAATTTCCCTGTTCTCAGCCAAGTTCAGCCAGGATATCTTCAGAAGCTTCTACCCGATTCTGCACCTGATTATCCTGATTCGTTGCGGCATGTTTTGAATGATGTACAGGAAAAGATACTACCAGGGGTGACACATTGGCAAAGCCCCAATTATTTTGCATATTTTCCTTCAAACAGCAGCATTGCTGGATTTCTAGGAGAGATGCTCAGTGCTGGTCTTAACATCGTGGGTTTCAGCTGGATAACTTCTCCTGCTGCAACTGAACTTGAAACCATTGTTCTCGATTGGCTCGCTAAGGCACTCCTCCTCCCTCATCATTTCTATTCTACTGGGCAAGGTGGTGGAGTTATACAGGGAACAGCAAGTGAAGCTGTGCTAGTTGTATTATTAGCTGCTCGTGACAAGATCTTGAGGAAAGTGGGAAGGGGTTCCCTTCCTAAGCTTGTGACATATGCATCTGATCAAACACACACTGCTTTGCAAAAAGCTTGTCAGATAGCAGGACTTGATCCAGCGCTTTGCAGGTTGCTTAAAACTGATTCTTCCACAGATTATGCGCTTTCTCCTGATGTACTTTCTGAAGCAATTTCAAATGACATGGCCAGCGGTCTTATACCCTTTTTCTTATGTGCTACTGTTGGTACCACCTCATCAACAGCTGTTGATCCTCTGCCTGCATTGGGAAAAATTGCCAAGACCAACCAACTTTGGTTTCATGTGGATGCTGCTTATGCTGGAAGTGCTTGTGTATGTTCAGAGTACCGCCACTACATTGATGGCATTGAAGAAGCAGACTCATTTAACATGAATGCGCATAAATGGTTCCTGACTAATTTTGACTGTTCACTACTTTGGGTTAAGGACAGGAGTGCTCTGATTCAGTCACTGTCAACAAATCCTGAATTTTTGAAAAACAAGGCCTCCCAAGGAAACATGGTCATAGATTACAAAGATTGGCAAATTCCTCTTGGACGTCGCTTCAGATCATTAAAACTGTGGATGGTGTTAAGACTCTATGGATTGGAAGGTCTCCGTAGTCACATAAGAAACCACATTGAAATGGCTGCTTATTTTGAGGAGCTTGTTGGTCAGGACGCAAGATTCGAGGTTATTGCGCCTCGTACATTCTCTTTAGTATGTTTTCGACTTTTGCCTCCTCTCAACTCAGAAGATCATGGCAATAAGCTAAATCATGATCTACTTGACTCGGTAAATTCAACAGGAAATATTTTCATAACTCACACGGTTCTATCAGGTCAGTACATTCTACGTTTTGCAGTAGGAGCACCATTGACTGAAAGGAGGCATGTCAGTATGGCGTGGCAGATTTTGCAAGATAAAGCCACTGCTCTACTTGAGAGTTTATAG 1473 0.4297 MEREENGLKGMDADQLREEAHKMVDFIADYYKTIHNFPVLSQVQPGYLQKLLPDSAPDYPDSLRHVLNDVQEKILPGVTHWQSPNYFAYFPSNSSIAGFLGEMLSAGLNIVGFSWITSPAATELETIVLDWLAKALLLPHHFYSTGQGGGVIQGTASEAVLVVLLAARDKILRKVGRGSLPKLVTYASDQTHTALQKACQIAGLDPALCRLLKTDSSTDYALSPDVLSEAISNDMASGLIPFFLCATVGTTSSTAVDPLPALGKIAKTNQLWFHVDAAYAGSACVCSEYRHYIDGIEEADSFNMNAHKWFLTNFDCSLLWVKDRSALIQSLSTNPEFLKNKASQGNMVIDYKDWQIPLGRRFRSLKLWMVLRLYGLEGLRSHIRNHIEMAAYFEELVGQDARFEVIAPRTFSLVCFRLLPPLNSEDHGNKLNHDLLDSVNSTGNIFITHTVLSGQYILRFAVGAPLTERRHVSMAWQILQDKATALLESL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0076 490 CDD DOPA_deC_like 86 481 - -
Apr4g0076 490 Gene3D - 92 384 IPR015421 GO:0003824
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 16 35 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 39 56 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 57 76 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 83 102 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 104 122 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 123 142 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 148 168 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 357 372 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 PRINTS Aromatic-L-amino-acid decarboxylase signature 400 419 IPR010977 GO:0006520|GO:0016831
Apr4g0076 490 Gene3D Aspartate Aminotransferase, domain 1 385 490 IPR015422 GO:0003824
Apr4g0076 490 SUPERFAMILY PLP-dependent transferases 11 483 IPR015424 -
Apr4g0076 490 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 11 489 - -
Apr4g0076 490 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 301 322 IPR021115 GO:0016831
Apr4g0076 490 Gene3D - 6 91 - -
Apr4g0076 490 Pfam Pyridoxal-dependent decarboxylase conserved domain 45 418 IPR002129 GO:0016830|GO:0019752|GO:0030170
Apr4g0076 490 PANTHER BNAA07G00240D PROTEIN 11 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0076 Apr-Chr4 656590 663366 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0076 K01593 - gmx:100791074 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0076 4 656590 663366 Apr4g0076 4 656590 663366 ECH