Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0067 ATGGCCTCTTCCTATCAGGGTTCCGTCAGTGCCGCCCAGGTCGGTTCCTACTTCGTTGGACAGTACTATCAGGTTCTTCGCCAGCAACCTAATCTCGTTCATCAGTTTTACTCTGATTCCAGCAGCATGCTTCGCGTTGACGGAGACTCCGTTGAATCGGCACACGATGTGTTGCAAATTCATTCAATTGTCATGTCACTGAATTTTACCACAATTGAGATCAAGACAATCAATTCTCTCGACTCTTGGGATGGGGGTGTGCTTGTAATGGTCTCAGGTTTTGTGAAGATAAAGGATGTTGGTGTGAGGCGAAAGTTTGTTCAAACATTCTTTCTTGCTCCACAGGAGAAGGGTTACTTTGTATTGAATGATATGTTTCATTTCATTGATGATGGAGTAGCGTACCCAAATCTGGTACCAACTGCGTCTGAAAAGATTGACACACAACCACATGTATCTGCTTCTCTTGCTGAGCCACCTACAGCTTCAGACTATGGTTTGGAGGAAGAAGCTAGTGAATATGTCAACTCTGTTCATATAGATGATGATCCAGTGGATAAGTATAGTCTTCCTGAGCATCATCAGCAGCTGCAAGAAGATCTTGAAGCAGAAATTGTGCTGGAGGAAACTCCTGCACGAGAGGTGTCTCCACCAATTCCTAGTGTTGCACATACCATCCAGGAATCCCCTGTCACTCTTTTGGAAGAGTCTTTGGAGGAGCCTCCTAAAAAAACTTATGCATCTATTTTACGAGTCTCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACAACATGCTCCACAACATTCTTTTAAAAGTGCTCCTCCTCCTTCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCGCGTCTATGTATATTCCTGAGTCTGGGGCTGAGGCAGCAGAGGAAGGCTATGGACTAGAAGATGAAGGTGAAGTAACATCTGTCTATGTGAGAAACTTACCTGCTACTGTTACTGAAGCTGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGGCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGGCTTCTCCCATACAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGGCAGCGCAGCTCGGGGAGGAAGAAGGGGAAGAGGGAGAGGCAATTATCAACCAGATGCTCCAAGAGGGCGTTTTGGTGGTAGGAGCACGGGAAGGGGAAGTAATCAGGATAACTCAGACTATACTAGACTAAGAGGTGATTATCTTCAGCGTGGTTCACGATAA 1359 0.4518 MASSYQGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMLRVDGDSVESAHDVLQIHSIVMSLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDVGVRRKFVQTFFLAPQEKGYFVLNDMFHFIDDGVAYPNLVPTASEKIDTQPHVSASLAEPPTASDYGLEEEASEYVNSVHIDDDPVDKYSLPEHHQQLQEDLEAEIVLEETPAREVSPPIPSVAHTIQESPVTLLEESLEEPPKKTYASILRVSKGQPVLSAAPQHAPQHSFKSAPPPSELNHVAQPAVQQSSSASMYIPESGAEAAEEGYGLEDEGEVTSVYVRNLPATVTEAEIDQEFKNFGRIKADGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGSAARGGRRGRGRGNYQPDAPRGRFGGRSTGRGSNQDNSDYTRLRGDYLQRGSR* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0067 452 MobiDBLite consensus disorder prediction 257 283 - -
Apr4g0067 452 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Apr4g0067 452 MobiDBLite consensus disorder prediction 427 441 - -
Apr4g0067 452 Gene3D - 300 447 IPR012677 -
Apr4g0067 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 384 IPR000504 GO:0003723
Apr4g0067 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Apr4g0067 452 SUPERFAMILY RNA-binding domain, RBD 316 426 IPR035979 GO:0003676
Apr4g0067 452 Gene3D - 3 132 - -
Apr4g0067 452 PANTHER GB|AAD20086.1 9 445 - -
Apr4g0067 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 445 IPR039539 -
Apr4g0067 452 MobiDBLite consensus disorder prediction 395 452 - -
Apr4g0067 452 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Apr4g0067 452 CDD RRM_SF 321 392 - -
Apr4g0067 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Apr4g0067 452 CDD NTF2 10 130 IPR018222 -
Apr4g0067 452 SMART rrm1_1 320 392 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0067 Apr-Chr4 583749 590858 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0067 - - gmx:100787900 756.133