Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0066 ATGGGAGATAGCGAATCAGTAGTTACAGAAACATCTGCCGCCGAGGCTTATGCTTCGGCTGGTTATGCTGACAGTGCGTCGAATCCTGTTCCTGAGGCAGGTGCTGCCGTTGGTGAGTCTGCTGGAGAAGCTGCTCAGGCCCATCCAGCTTACAGTTATGGTTATTCTAATGTTGGTGATGGGAATGGGAATACTTATGCTGGGGATCCTAATTCTGTTCTACAACAAGCTCAATTCAATGCAAACGATGATTCCAAGCAAACTGCTGGAGTGACTGATGCTAGTGAGGCGTCCACTGGGCTCGGAAACATGGCAACAGAATCTAATATAGTTTCTGCTTACAATTCATCCCTAAATGGCGGTGTTGTCAGTGCAGCAGCAAATGTAGCAGGACTTGAAAACGGGAATGCGTTGGAGAGTGTTGATGGACAAGCTGATGAGAAACAGCTTACAGATGGTTATGCAGCTTCCTTGTCTGCTGAAGAAGATCGATTGTGGAATATTGTAAGAGCTAATTCTTTAGATTTCACTGCTTGGACTGCCTTGATTGAAGAGACAGAGAAGGTCGCAGAGGACAATATTTTGAAGATTCGAAGAGTTTATGATGCTTTTCTAGCAGAGTTTCCCTTGTGCTATGGTTATTGGAAGAAATATGCTGACCATGAGGCACGTCTTGGCTCTGTGGATAAAGTTGTTGAAGTGTACGAACGTGCTGTTCAAGGGATTACATACTCAGTGGACATGTGGTTGCATTATTGTATATTTGCTATCAGCACATATGGGGATCCAGATACAGTTCGTAGGCTTTTTGAACGAGGATTAGCTTACGTTGGAACAGATTATTATTCTTTTCCCCTTTGGGATAAATACATTGAATATGAGTACATGCAGCAGGACTGGGCCCGTCTTGCCATGATTTACACCAGGATATTAGAAAATCCAAATCAGCAATTGGATCGGTATTTCAGCAGCTTTAAGGAGCTAGCTGGAAATCGACCTTTGTCAGAATTACGCACTGCTGATGAAGCTGCTGCCGCGGCAGGTGTAGTTTCCGAGGCTACTGGCCAAGCAGTTGAGGGAGAGGTTCGTCCTGATGGGGCGGAACATTCTCCTAAATCTGTAAGTGCTGGCTTAACAGAAGCAGACGAGTTGGAGAAGTATATCGCCATTAGAGAAGAGCTGTATAAGAAAGCTAAAGAGTTTGATTCTAAGATCATTGGTTTTGAAACAGCTATCAGGAGGCCCTATTTTCATGTTCGGCCCCTTAATGTTGGAGAGCTTGAGAATTGGCATAACTATCTGGACTTTATAGAACGGGAAGGTGACTTAAGCAAGATTGTCAAGTTGTATGAGAGATGTGTAATTGCATGTGCCAATTACCCTGAGTACTGGATACGGTATGTTTTGTGTATGGAAGCCAGTGGAAGCATGGATCTTGCAAATAATGTCCTTGCTCGAGCAACCCAAGTCTTTGTTAAGAGACAACCGGAGATACATCTTTTTTGTGCTCGGTTCAAGGAGCAGGTTGGAGATATAGATGGTGCTAGAGCTGCATACCAACTTGTGCATTCTGAAATTTCTCCCGGTCTTCTTGAAGCAATAATCAAGCATGCTAATATGGAACACAGACTGGGAAAGTTGGAGGATGCTTTTTCTTTGTATGAACAGGCCATTGCTATTGAGAAAGGAAAAGAACATTCACAAACATTGCCAATGTTGTTTGCACAGTATTCTCGATTTGTATATTTGGCTTCTGGGAATGCGGAGAAGGCAAGACAGATTCTGGTTGATGGGCTTGAGAATGTTGTGTTGTCAAAGCCACTACTTGAGGCTTTATTGCATTTTGAGGCCATTCAACCCTTGCCAAAAAGAGTTGATATTGACTTTCTGGAGTCATTGGTTGTTAAATTCATAATGCCTAACCCAGAGAGCTCTGGTGTAGCTAGTGCAACTGAGCGTGAGGATCTTTCTAGTATTTTTCTAGAGTTTTTAAATCTCTTTGGAGATGTTCAATCTATCAAGAGGGCCGAGGATAGGCATGCTAAATTGTTTTTGCCGCATAGAAGTATGTCGGAATTGAAAAAACGTCATGCTGAGGACTTCTTGGCTTCCGATAAAACGAAAGTGCCAAGAAATTACTCTGTTCAATCACCTGCCCAATCCCTGATGGGTGCATATCCAAATGCTCAGAACCAATGGACTAATTATGGAGTACAACCTCAAAGTTGGCCACCAGTCACACAAGCACAAGGACAACAATGGACTGCTGGCTACACCCAGCAGGCTTCCTATGGGGCTTATGCTGGATATGGGGGCAACTACGCAAACCCTCAATTGCCTACATCAGTTCCGCAAAGTACTGCTTACGGAGCCTATCCTCCTACATATCCTGTACAGCCGGCACTTCCTCAACAAAATTATGCACAACCTGCTGCAGCTCCTCAGGCCTATTACGGGGGGAGTTATTACTGA 2472 0.4401 MGDSESVVTETSAAEAYASAGYADSASNPVPEAGAAVGESAGEAAQAHPAYSYGYSNVGDGNGNTYAGDPNSVLQQAQFNANDDSKQTAGVTDASEASTGLGNMATESNIVSAYNSSLNGGVVSAAANVAGLENGNALESVDGQADEKQLTDGYAASLSAEEDRLWNIVRANSLDFTAWTALIEETEKVAEDNILKIRRVYDAFLAEFPLCYGYWKKYADHEARLGSVDKVVEVYERAVQGITYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYYSFPLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFSSFKELAGNRPLSELRTADEAAAAAGVVSEATGQAVEGEVRPDGAEHSPKSVSAGLTEADELEKYIAIREELYKKAKEFDSKIIGFETAIRRPYFHVRPLNVGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASGSMDLANNVLARATQVFVKRQPEIHLFCARFKEQVGDIDGARAAYQLVHSEISPGLLEAIIKHANMEHRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNAEKARQILVDGLENVVLSKPLLEALLHFEAIQPLPKRVDIDFLESLVVKFIMPNPESSGVASATEREDLSSIFLEFLNLFGDVQSIKRAEDRHAKLFLPHRSMSELKKRHAEDFLASDKTKVPRNYSVQSPAQSLMGAYPNAQNQWTNYGVQPQSWPPVTQAQGQQWTAGYTQQASYGAYAGYGGNYANPQLPTSVPQSTAYGAYPPTYPVQPALPQQNYAQPAAAPQAYYGGSYY* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0066 823 Gene3D Tetratricopeptide repeat domain 167 333 IPR011990 GO:0005515
Apr4g0066 823 SUPERFAMILY TPR-like 169 688 IPR011990 GO:0005515
Apr4g0066 823 MobiDBLite consensus disorder prediction 21 41 - -
Apr4g0066 823 Gene3D Tetratricopeptide repeat domain 421 719 IPR011990 GO:0005515
Apr4g0066 823 PANTHER PRE-MRNA-PROCESSING FACTOR 39 42 814 - -
Apr4g0066 823 SMART hat_new_1 441 473 IPR003107 GO:0006396
Apr4g0066 823 SMART hat_new_1 226 258 IPR003107 GO:0006396
Apr4g0066 823 SMART hat_new_1 261 296 IPR003107 GO:0006396
Apr4g0066 823 SMART hat_new_1 545 580 IPR003107 GO:0006396
Apr4g0066 823 SMART hat_new_1 586 618 IPR003107 GO:0006396
Apr4g0066 823 SMART hat_new_1 192 224 IPR003107 GO:0006396
Apr4g0066 823 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 42 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0066 Apr-Chr4 572576 582065 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0066 K13217 - gmx:100787373 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0066 4 572576 582065 Apr4g0066 4 572576 582065 ECH