Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0053 ATGGAGGATTCTAGAAAATCTAGCAGCAGCAAAACTAAACTGTTGAATCCATGGATGCTTCACTTCCAGAAACTCGCTCTGGAACTCAAGTGCCCTCTCTGTTTGAGCTTGTTCAAGAGGCCGGTGTTACTTCCGTGCAACCACTTGTTCTGCAATTCCTGCTTGGCTGATTGCGTAACTGTTGGGTCTGAATGTGCTGTCTGTAAGACTAAGTATGCTCAAACAGATGTAAGGCACATGCCTTTTGTGGAAAATATGGTAGCAATCTATAGAAGCTTGGATGCCACCTTTTGTGCTAGTTTGTTTCAGCAACGTTCTTCTGATGATGTGAGGGTTCTGGAACCATGCCAGGCATTTCACAATTCCACTTCTAGTAGCATAAAAACTGACAAGGTTCCACGGAATTTACCCAATTGCAATGAGATTGGGGTTGGCAAGAATCACAGATCTAAGATTGCAGTGCATGATAAAGCTGATGAGCTTGAGATGTCTTGTGGGAGAAGGAAGCCTAATCTGATCCAGCAGATGGAACTTGGGGAAATGGATGTGAATCAAGTGACACAATCAGCACCTGACAGCCCTCCATTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGACAGTGAGCAACGATTACCTCCTGATAGTTTGGGAAATTCCTCGTTAAAGAGAGCAAGCACTGGAAATGGAAATTTGAAAGAAAGAAGGGGACAGTTCAGGTCTGAAAGTTCAGCATCTGAAACTGAGGGTCTTGTGAGAGATGTTAAGAGACAAAAGGTTTTGGATCCTAAATCTGGAAAGGACCCTGATGAACTATTGACCACAGATGCATCAAATGACTTGTGTCAAAGTGCAAGTATCTGTTCGTTTTGCCAATCCTCTAAAACCTCAGAGGCTACTGGGCCAGTACTGCATTATGCAAATGGGAATTTAGTTACGGGAGATGCAACAAAGCAACCAAATGTCATACCTGTGCACAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGTTGATGAAACAGTTAAGAATTTGAAGGCAGAACTGGCAAGGGGAGCAAAACTTAAATGCAGCAAATGTGGTCTGAAGGGAGCTGCTCTTGGATGCTATGTCAAATCCTGTAGAAGAACTTACCATGTTACTTGTGCAATGGACATCTCAACTTGCCGATGGGATCATGAGGATTTTCTCTTACTCTGTCCTGTCCATTCTTATGTCAAATTCCCAAGTGAGAAATCCAGGCCTAGACAACAGTCAAAGCGTCCTACTTTGTCTCATCAGCCATCTCACCCCTCAAATCCTCTTGAAGCTTCCCAGGATGACAGTAGAAAATTGGTGTTTTGTGGATCTGCTCTATCAATTGATGAAAAGGTAATTTTAATCAATTATGCAAGCAGTGTTGGTGCTGTAGTGACCAAGTTCTGGAGCTCAAATGTCACCCATGTGATTGCAGCAACTGATGCAAATGGAGCGTGCTCCCGAACATTGAAAGTTCTCATGGCAATTCTACATGGACGATGGGTTCTAAAAATGGATTGGGTAAAAGCATGCATGGATGAGATGAATCCTGTTAACGAAGAACCATATGAAATTAATCTTGACAACCAAGGGTGTCATGGTGGCCCAAAAGCTGGCAGACTTAGGGCAATGGCCAATGAGCCAAAGCTATTCAGTGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCTGCTTATAAGGAAGATCTTGAAGAATTAATTGAAGTGGGGGGAGGTGTTGTTTTGAAAAGCAAGGATGAGTTGGAGGCCCAAAGAGATAAATGTGAAGCTGATTCTTCCAAGTTGCTGGTTGTTTACAACCTTGATCCCCCACAAGGATGTAAGTTGGGGGAGGAAGTTTCAATTCTTTGGCAGAGGCTAAACGAGGCAGAGGATTTAGCTGCTAATACTGGTTATCAAGTCATTGGTCACACGTGGATCCTTGAATCAATTGCTGCTTGTAAACTGCAGTCTTTTGTTAGCTAA 2016 0.4286 MEDSRKSSSSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCVTVGSECAVCKTKYAQTDVRHMPFVENMVAIYRSLDATFCASLFQQRSSDDVRVLEPCQAFHNSTSSSIKTDKVPRNLPNCNEIGVGKNHRSKIAVHDKADELEMSCGRRKPNLIQQMELGEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEQRLPPDSLGNSSLKRASTGNGNLKERRGQFRSESSASETEGLVRDVKRQKVLDPKSGKDPDELLTTDASNDLCQSASICSFCQSSKTSEATGPVLHYANGNLVTGDATKQPNVIPVHRICIDWAPQVYFVDETVKNLKAELARGAKLKCSKCGLKGAALGCYVKSCRRTYHVTCAMDISTCRWDHEDFLLLCPVHSYVKFPSEKSRPRQQSKRPTLSHQPSHPSNPLEASQDDSRKLVFCGSALSIDEKVILINYASSVGAVVTKFWSSNVTHVIAATDANGACSRTLKVLMAILHGRWVLKMDWVKACMDEMNPVNEEPYEINLDNQGCHGGPKAGRLRAMANEPKLFSGLKFYFSGDYVSAYKEDLEELIEVGGGVVLKSKDELEAQRDKCEADSSKLLVVYNLDPPQGCKLGEEVSILWQRLNEAEDLAANTGYQVIGHTWILESIAACKLQSFVS* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0053 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 410 IPR013083 -
Apr4g0053 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 103 IPR013083 -
Apr4g0053 671 SUPERFAMILY RING/U-box 28 91 - -
Apr4g0053 671 ProSiteProfiles Extended PHD (ePHD) domain profile. 288 408 IPR034732 -
Apr4g0053 671 MobiDBLite consensus disorder prediction 424 442 - -
Apr4g0053 671 SUPERFAMILY BRCT domain 449 536 IPR036420 -
Apr4g0053 671 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Apr4g0053 671 CDD ePHD 328 407 - -
Apr4g0053 671 Pfam Zinc finger, C3HC4 type (RING finger) 28 73 - -
Apr4g0053 671 MobiDBLite consensus disorder prediction 213 237 - -
Apr4g0053 671 Pfam BRCT domain, a BRCA1 C-terminus domain 558 668 IPR001357 -
Apr4g0053 671 ProSiteProfiles BRCT domain profile. 556 671 IPR001357 -
Apr4g0053 671 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 11 668 - -
Apr4g0053 671 SUPERFAMILY BRCT domain 560 668 IPR036420 -
Apr4g0053 671 SMART BRCT_7 443 525 IPR001357 -
Apr4g0053 671 SMART BRCT_7 558 664 IPR001357 -
Apr4g0053 671 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 668 IPR031099 GO:0006281|GO:0006974
Apr4g0053 671 MobiDBLite consensus disorder prediction 186 276 - -
Apr4g0053 671 MobiDBLite consensus disorder prediction 415 442 - -
Apr4g0053 671 Pfam PHD-like zinc-binding domain 329 408 - -
Apr4g0053 671 MobiDBLite consensus disorder prediction 238 276 - -
Apr4g0053 671 Pfam BRCA1 C Terminus (BRCT) domain 465 522 IPR001357 -
Apr4g0053 671 Gene3D BRCT domain 558 664 IPR036420 -
Apr4g0053 671 ProSiteProfiles BRCT domain profile. 446 535 IPR001357 -
Apr4g0053 671 CDD BRCT_Bard1_rpt1 449 524 - -
Apr4g0053 671 SMART ring_2 361 407 IPR001841 -
Apr4g0053 671 SMART ring_2 31 68 IPR001841 -
Apr4g0053 671 Gene3D BRCT domain 446 551 IPR036420 -
Apr4g0053 671 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0053 Apr-Chr4 483376 489138 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0053 K10683 - gmx:100784883 1113.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0053 4 483376 489138 Apr4g0053 4 483376 489138 ECH