Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0031 ATGGACAAGTTGAAACTGGGTGAGCTCGGGGAGAGGCTGAAGACGGGTGGGGCCCAGATGGGGCGAATCGTGAGTGGGAAGGTGAAGGAGATCTTGCAGGCCCCAACTCCTGAGTCCAAGATGGTGGATGAGGCCACCTTGGAGACCATGGAAGAGCCCAATTGGGGCATCAATCTCAGAATATGTGGCATGATCAATTCCCAACACTTTAATGGCTCCGAGGTTGTTAAGGCCATCAAGAGAAAGATCAATCACAAGAGCTCCGTTGTTCAGACACTCAGCCTCGACCTCTTGGAAGCTTGTGCCATGAATTGTGAAAAGGTCTTCTCTGAAATTGCTTCCGAGAAGGTTCTAGATGATATGATTCGCGTGATTGATAATCCACAGGCCCATCCTCACAATCGAAGACGGGCTTTTCAGTTGATTAGGGCTTGGGGTGAGTCAGAGGATCTTGCCTATCTTCCTGTCTTTCGTCAGACTTACATGAGTTTGAATGGAAGAGCTGAACCACTCGACATGACCGGAGGCAATTCACAACCTGTTCCATATGGCTCGGAGTCATTTACCCATGAACCTTTAGATCCTCCTGAAAGATACCCAATTCCTGAAGCAGGATTACATGCTATGGATGACTCTGCTGCTTTCTCTTCTAATTACCAACACATATCAATTGAAGAGAAGAAGGAGCATCTCGTGGTTGCTCGAAACAGTCTTGAATTGCTCTCTAGCATATTAAGTTCTGAGGCTGAGCCAAAACCTTTGAAGGAAGATCTAACTGTGAGCTTGTTGGAGAAGTGCAAAGAATCACTTTCTATCATCAAGGGCATTGTGGAAAGCACGACAAATGACGAAGCGACCCTTTTTGAGGCTTTATATCTCAATGATGAGCTGCAACAGGTAGTTTCCAAATATGAGGAGTTGGAAGCTGCTGAAAGGTCTGGGGCACAACAACCTCAAAATGCGGACACTGGCAAGCATGATGCAGAAGCTGTTCAAAAGACCAATGAACTAGCTGAAAGATTTGAAGGCAATGAATCTGAAGAATCCAAAGCTTCTCAGAATCTTGACATAAAAAATCTGCCCCAGAAGTCTATAACTCTTGAAGCCAATGCAACCGAGGGGGATGGTCTTGTTGAAACCAAAGTAGTGGATAGCACAAACGAGAAGAATGCTGAATCTAGCTTGAAGGGAAATACAAATACCGAATGA 1209 0.4557 MDKLKLGELGERLKTGGAQMGRIVSGKVKEILQAPTPESKMVDEATLETMEEPNWGINLRICGMINSQHFNGSEVVKAIKRKINHKSSVVQTLSLDLLEACAMNCEKVFSEIASEKVLDDMIRVIDNPQAHPHNRRRAFQLIRAWGESEDLAYLPVFRQTYMSLNGRAEPLDMTGGNSQPVPYGSESFTHEPLDPPERYPIPEAGLHAMDDSAAFSSNYQHISIEEKKEHLVVARNSLELLSSILSSEAEPKPLKEDLTVSLLEKCKESLSIIKGIVESTTNDEATLFEALYLNDELQQVVSKYEELEAAERSGAQQPQNADTGKHDAEAVQKTNELAERFEGNESEESKASQNLDIKNLPQKSITLEANATEGDGLVETKVVDSTNEKNAESSLKGNTNTE* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0031 402 MobiDBLite consensus disorder prediction 308 328 - -
Apr4g0031 402 MobiDBLite consensus disorder prediction 340 402 - -
Apr4g0031 402 MobiDBLite consensus disorder prediction 353 369 - -
Apr4g0031 402 MobiDBLite consensus disorder prediction 383 402 - -
Apr4g0031 402 CDD VHS 39 164 - -
Apr4g0031 402 PANTHER TOM1-LIKE PROTEIN 1 1 353 IPR044836 GO:0035091|GO:0043130|GO:0043328
Apr4g0031 402 SUPERFAMILY ENTH/VHS domain 34 164 IPR008942 -
Apr4g0031 402 SUPERFAMILY GAT-like domain 192 308 - -
Apr4g0031 402 SMART VHS_2 38 168 IPR002014 GO:0035091|GO:0043130
Apr4g0031 402 Pfam GAT domain 235 308 IPR004152 GO:0035091|GO:0043130
Apr4g0031 402 ProSiteProfiles GAT domain profile. 222 309 IPR004152 GO:0035091|GO:0043130
Apr4g0031 402 Gene3D - 30 174 IPR008942 -
Apr4g0031 402 PANTHER TOM1-LIKE PROTEIN 2 1 353 - -
Apr4g0031 402 Gene3D - 216 311 IPR038425 -
Apr4g0031 402 Pfam VHS domain 39 146 IPR002014 GO:0035091|GO:0043130
Apr4g0031 402 ProSiteProfiles VHS domain profile. 45 172 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0031 Apr-Chr4 283190 285373 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0031 - - gmx:100803803 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0031 4 283190 285373 Apr4g0031 4 283190 285373 ECH