Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0013 ATGGCGAACCCTCAAAATCAGAAGCCATGGAAGGTGGAGTACGCGAAGTCTGGACGATCGTCATGCAGGACGTGCAAGAGCACCATTGCCAGCGAGACCCTCCGTCTCGGCAAGATGGTTCAATCCACGAAGTTCGATGGCCTCATGCCTATGTGGAATCATGTTGATTGTATATTGAAGAAAGCCAACCAGATAAAAGCAATTGACGATGTTGAAAACATAGACTCGCTTCGTTGGGAAGATCAGCAGAAGATCCGAAAATACATAGAGAGCGGTGGTGGCAGCGCGACAAAGTCAAACTCAAATACCATCAAAGATGCTGAATGTGTTATTGAAGTTTCTCAAACTTCTCGTGCTACTTGCAGGGATTGTGGTAAAAAAATTATCAAAGGAGAGGTTCGCATATCCACTAAGCCTGATGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCTAAGTGTCTCATGGAATTATCACCATCAATTCAAGTGGATAAGTTGTCTGGATGGAATAGTCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTGGCTAAGAAGGATCATCCTATGAGTAAGGGGGGTGGTAGTGGTACAAACATCAAGGCTGAGAAGGGTAAAGAATCCACACAACAAAACACTTTCAAAGGTGGCATAAAACGGGGGAAGGATGCTGAAGGTGTGCAGAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTTTGCAGGCAAGGCAGCATCAGTGAATAATGATAATGATCCAGGGGAAGCATGTGATCTGGAGAATAGATTGGAGGCCCAGAACAAAGAATTCTGGGCTGTGAAGGATGATCTTAAAAAGCATGTGACAACATCAGAGTTGCGGGAAATGCTAGAAGCCAATGGTCAAGATTCTACAGGATCAGAACTTGATTTGCGCGATCGCTGTGCTGATGGAATGATGTTTGGAGGACTTGGTCATTGCCCAATATGTTCTGGTTTTGTGCGTTATTCGGGAGGAATGTACCGGTGCAATGGATACATTTCCGAGTGGGGTAAATGTTCTTACACTACCCGTGAACCAAAACGTATTGAAGGGAAGTGGAAAATCCCAGAGGAAACAAAAAATCAGTATCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAATTAGGATATTGCCTCTGTCTTCATCAGGGAATTCTGCTGAAAATCAAATTAATGCTTGCCAGCATCAATCATCAAACAGTGAAAGCTTGCAAGATTTGAAAGTTGCTATCTGTGGATTACCTAAAGACTCTATTGAGCAATGGAAATGCAAAATTGATGGCGTAGGTGGGGTGCTTCATGCAAAAGTAAAAAAAGATACTAACTGCTTGGTGGTCAGTGCAGTGCTCAGTGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGGTTGACTGTATAGAAAGAAAGAAGAAGCTTCCATTTGATATGTACAAGGTTGAAATGATTGGCGAGGCTTCTAGCATGGTCACCATCAAAGTGAAGGGGCACAGTGCTGTACACGAGGCTTCTGGCCTGCAGGATTCTGGCCACATACTCGAGGAAGGGAAAAGCATATATAATACAACTTTGAATATGTCAGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAAATAATCCAGGAAGATAAGGGGTCAGGTTGTTATGTGTTTCGTAAATGGGGTCGAGTGGGAAATGACAAGATTGGAGGAATTAAACTGGATGAAATGCCAAAATCTGATGCAATCTGTGAATTCAAACGATTATTCTTTGAGAAGACTGGAAATCCTTGGGAGGCTTGGGAACAAAAGACTATTCAGAAGCAACCTGGAAGATTCTTCCCATTGGATATTGATTATGGAGTTAACAAACAGGTCTCAAAAAAGAATAAAAATAATACAGCCAGCAAACTACCCCCTCCATTGATAGAATTGATGAAGATGCTCTTCAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAGCTGAGCAAGAGCAATATCCAAAAGGGGTTTGAAGCATTGACAGAGATACAAAATCTGTTAAAAACTAGCAATCCTGATCCATCAATCAAGGAAAGCTTGCTTATTAATGCCAGCAATCGGTTCTTCACTATGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGACGATTTTAAGTCAAAGGTGAAAATGTTAGAAGCACTTCAAGACATTGAAATAGCCTCAAGATTAGTCGGATTTGATGCCAACAGTGATGACTCCATTGATGATAATTATAAGAAGCTGCATTGTGATATATCTCCACTCCCTCATGATAGTGAAGATTTTTGTTTAATTGAGAAATTTCTCCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGAGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGTAACAGAATGCTCCTATGGCATGGTTCTAGGTTAACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCTCCAGCAACTGGCTATATGTTTGGCAAAGGGATTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTACCCTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGATGTTGCCCTTGGAAATGTGTATGAGCTCAAGAAAGCTAAGTACATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGAAAGAAAATGCCTCTTGAATCGGAATATGTAAAGTGGAGGGGTGATGTTACTGTTCCATGTGGGAAACCAGTGTCATCAAATGTCAAGGCTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATACTTGTTGAAGGTGAGGTTTCATCACAAGAAATGA 3000 0.4143 MANPQNQKPWKVEYAKSGRSSCRTCKSTIASETLRLGKMVQSTKFDGLMPMWNHVDCILKKANQIKAIDDVENIDSLRWEDQQKIRKYIESGGGSATKSNSNTIKDAECVIEVSQTSRATCRDCGKKIIKGEVRISTKPDGQGAKGLAWHHAKCLMELSPSIQVDKLSGWNSLSSSDQSAVSDLAKKDHPMSKGGGSGTNIKAEKGKESTQQNTFKGGIKRGKDAEGVQKSKVAKAKGDVFAGKAASVNNDNDPGEACDLENRLEAQNKEFWAVKDDLKKHVTTSELREMLEANGQDSTGSELDLRDRCADGMMFGGLGHCPICSGFVRYSGGMYRCNGYISEWGKCSYTTREPKRIEGKWKIPEETKNQYLKKWFKSQKGKKPIRILPLSSSGNSAENQINACQHQSSNSESLQDLKVAICGLPKDSIEQWKCKIDGVGGVLHAKVKKDTNCLVVSAVLSDEAEMRKARRMKIPIVREDYLVDCIERKKKLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSGCYVFRKWGRVGNDKIGGIKLDEMPKSDAICEFKRLFFEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKNKNNTASKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKTSNPDPSIKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANSDDSIDDNYKKLHCDISPLPHDSEDFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYPDKKNPVGLMLLSDVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPLESEYVKWRGDVTVPCGKPVSSNVKASELMYNEYIVYNTAQVKMQYLLKVRFHHKK* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0013 999 Gene3D - 784 999 - -
Apr4g0013 999 ProSiteProfiles PARP catalytic domain profile. 774 999 IPR012317 GO:0003950
Apr4g0013 999 Gene3D - 317 377 IPR038650 -
Apr4g0013 999 SMART PADR1_2 305 358 IPR012982 -
Apr4g0013 999 Pfam PADR1 (NUC008) domain 307 356 IPR012982 -
Apr4g0013 999 Pfam Poly(ADP-ribose) polymerase catalytic domain 794 995 IPR012317 GO:0003950
Apr4g0013 999 ProSiteProfiles BRCT domain profile. 409 499 IPR001357 -
Apr4g0013 999 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 191 - -
Apr4g0013 999 Gene3D - 2 108 IPR036957 GO:0003677|GO:0008270
Apr4g0013 999 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 109 183 IPR001510 GO:0003677|GO:0008270
Apr4g0013 999 SMART BRCT_7 411 489 IPR001357 -
Apr4g0013 999 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 94 - -
Apr4g0013 999 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Apr4g0013 999 SMART WGR_cls 539 622 IPR008893 -
Apr4g0013 999 Gene3D - 109 190 IPR036957 GO:0003677|GO:0008270
Apr4g0013 999 ProSiteProfiles PARP alpha-helical domain profile. 649 767 IPR004102 GO:0003950
Apr4g0013 999 SUPERFAMILY ADP-ribosylation 783 998 - -
Apr4g0013 999 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 112 183 IPR001510 GO:0003677|GO:0008270
Apr4g0013 999 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Apr4g0013 999 CDD parp_like 650 994 - -
Apr4g0013 999 ProSiteProfiles WGR domain profile. 528 627 IPR008893 -
Apr4g0013 999 ProSiteProfiles SAP motif profile. 279 313 IPR003034 -
Apr4g0013 999 PANTHER DNA LIGASE 50 993 - -
Apr4g0013 999 Gene3D BRCT domain 405 506 IPR036420 -
Apr4g0013 999 SUPERFAMILY BRCT domain 410 499 IPR036420 -
Apr4g0013 999 Pfam WGR domain 539 617 IPR008893 -
Apr4g0013 999 Gene3D - 639 783 IPR036616 GO:0003950
Apr4g0013 999 MobiDBLite consensus disorder prediction 181 231 - -
Apr4g0013 999 MobiDBLite consensus disorder prediction 203 217 - -
Apr4g0013 999 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 650 784 IPR036616 GO:0003950
Apr4g0013 999 Pfam Poly(ADP-ribose) polymerase, regulatory domain 650 780 IPR004102 GO:0003950
Apr4g0013 999 PIRSF NAD_ADPRT 3 999 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Apr4g0013 999 Pfam BRCA1 C Terminus (BRCT) domain 413 486 IPR001357 -
Apr4g0013 999 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 993 - -
Apr4g0013 999 CDD WGR_PARP1_like 529 634 - -
Apr4g0013 999 Gene3D - 243 316 - -
Apr4g0013 999 SUPERFAMILY WGR domain-like 507 632 IPR036930 -
Apr4g0013 999 SMART zf_PARP_3 112 186 IPR001510 GO:0003677|GO:0008270
Apr4g0013 999 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0013 Apr-Chr4 124817 134522 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0013 K24070 - gmx:100800968 1754.57