Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1934 ATGGCTTCATCGGAGATTGAGGTCGTTTCATCGGACTCCAAACCCAATGACCGTCCTCCAATACTCGACGTCTTCACTGCCTCTTCTCATGGCGACTTTCACAAATTGAGGTCTTTTGTTCAATATGACGGCGCCTCCGTTTCCGTTCCCGATGTTAATGGTTATTATGCTCTTCAATGGGCTTCCCTTAACAACTTTCATGAAATTGTGCACTATCTCATTCAGCATGGAGCTGATGTCAATGCTAAAGACAACATGCAACAAACGGCATTGCATTGGGCGGCTGTTCGTGGTTCAACTGCGGCAGCTGATGTGCTCTTGGAGAATGGTGCTCGGGTTGAAGCTGCTGACATAAATGGATATCGGGCAGTTCATGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCATGTTGTGGTAAAGTACAATGCTGATTTTGATGTGCCTGATAATGATGGAAGGAGTCCTCTTCATTGGGCTGCATATAAGGGATTTGCCGATACGATAAGATTGCTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACTCCGTTGCACTGGGCTGCATTAAGAGGACATGCAGAGGCATGTGCTGTGCTTGTACATGCAGGCACAAAGGAGGAATTGTTGGTGAAGGATAATGCTGGCTTCACTCCTGTACAACTTGCATATGATAAAGGTCATCGGCATGTCACTTCTTTCCTTTCTAATCAACAACGAGGTCGTAGCAAATACTGGAGAGGTAAACTTTGTAATGGGATGGTGACAGATATTGGTTATGCTCCCATCTTATTGTGTATTATAGTCTTTCTTATGATCCTCTTCATCAACTCAGTCATTGCAGCTCCCAACCTTAAAAAGATTACTGCAATTGTTGGAATTTGGGCATGGACAGCTCTTTCTTTGACAGTTGGTGCCCTGATTATGTTTTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAACGGCCGGGAGACTTGGATACACAAAGTGATACGGAGGATCCTTTATTGAATATTGACCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCTACCTGCAAGATAATAAGACCTGTCCGATCCAAGCATTGTCCTACTTGTAAGCGCTGTGTGGAACAGTTTGACCACCATTGTCCGTGGATATCTAACTGTGTTGGGAAGAGGAACAAGAGGGATTTCTTTATTTTTATCTGCATGGGAACTTTGACTTCTTTCCTAGCTGCTGCCATTGCAGTTCAAAGAATTTGGACATCTACACCTGCATTACCAGCAGGAGAAACGTGGACCCATCATGTGTTAGTAAGATATCCAGGTCTTCTTGTGTTTTTGGTGATGGATGCTGTTGTTTTCATTGCAGCTACAACATTAACGATAACACAGGCCTCCATGATAGCTCGAAATGTCACCACAAATGAACTAGCGAATTCCTCCCGTTATGAATATCTTCGTGGTCCTGATGGGCGGTTCAGAAACCCATATAACCACGGTTGTTGGAAGAATTGTGCTGACTTTCTTTCTCTGGGCTACACAGATGATAATGTTATTGCTTGGCCACCATTACAGCGGGTGGTGATTTAG 1614 0.4337 MASSEIEVVSSDSKPNDRPPILDVFTASSHGDFHKLRSFVQYDGASVSVPDVNGYYALQWASLNNFHEIVHYLIQHGADVNAKDNMQQTALHWAAVRGSTAAADVLLENGARVEAADINGYRAVHVAAQYGQTAFLNHVVVKYNADFDVPDNDGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKDGCTPLHWAALRGHAEACAVLVHAGTKEELLVKDNAGFTPVQLAYDKGHRHVTSFLSNQQRGRSKYWRGKLCNGMVTDIGYAPILLCIIVFLMILFINSVIAAPNLKKITAIVGIWAWTALSLTVGALIMFYRCSSKDPGYIKRPGDLDTQSDTEDPLLNIDLNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICMGTLTSFLAAAIAVQRIWTSTPALPAGETWTHHVLVRYPGLLVFLVMDAVVFIAATTLTITQASMIARNVTTNELANSSRYEYLRGPDGRFRNPYNHGCWKNCADFLSLGYTDDNVIAWPPLQRVVI* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1934 537 ProSiteProfiles Ankyrin repeat region circular profile. 86 117 - -
Apr3g1934 537 ProSiteProfiles DHHC domain profile. 360 410 - -
Apr3g1934 537 ProSiteProfiles Ankyrin repeat region circular profile. 153 179 - -
Apr3g1934 537 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g1934 537 Pfam DHHC palmitoyltransferase 360 487 IPR001594 GO:0016409
Apr3g1934 537 Gene3D - 139 190 IPR036770 -
Apr3g1934 537 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Apr3g1934 537 PANTHER PROTEIN S-ACYLTRANSFERASE 24 7 525 - -
Apr3g1934 537 ProSiteProfiles Ankyrin repeat profile. 119 152 IPR002110 GO:0005515
Apr3g1934 537 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Apr3g1934 537 Pfam Ankyrin repeats (3 copies) 117 182 IPR002110 GO:0005515
Apr3g1934 537 Pfam Ankyrin repeats (3 copies) 27 116 IPR002110 GO:0005515
Apr3g1934 537 Pfam Ankyrin repeat 186 210 IPR002110 GO:0005515
Apr3g1934 537 SUPERFAMILY Ankyrin repeat 25 243 IPR036770 -
Apr3g1934 537 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Apr3g1934 537 ProSiteProfiles Ankyrin repeat region circular profile. 186 210 - -
Apr3g1934 537 PANTHER - 7 525 - -
Apr3g1934 537 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Apr3g1934 537 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Apr3g1934 537 SMART ANK_2a 221 252 IPR002110 GO:0005515
Apr3g1934 537 SMART ANK_2a 119 149 IPR002110 GO:0005515
Apr3g1934 537 SMART ANK_2a 186 217 IPR002110 GO:0005515
Apr3g1934 537 SMART ANK_2a 86 115 IPR002110 GO:0005515
Apr3g1934 537 SMART ANK_2a 53 82 IPR002110 GO:0005515
Apr3g1934 537 SMART ANK_2a 153 182 IPR002110 GO:0005515
Apr3g1934 537 Gene3D - 191 244 IPR036770 -
Apr3g1934 537 Gene3D - 7 138 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1934 Apr-Chr3 35335883 35345700 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1934 7 282 Miscellaneous Gene Families AT2G31820 23.926 9.36e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1934 K20032 - gmx:100798740 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1934 3 35335883 35345700 Apr3g1934 3 35335883 35345700 ECH