Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1930 ATGGAAGCACGTGCAGGAGCCAATCAGCGTATTGCAAGAATCTCTGCTCATCTTCACCCTTCAAATTTTCAGGAAGGAGGTGATGTTGTTCTTAAGAGAGATGAGTGCCGAGCAAAAGGTGGGGCACCCGGATTCAAAGTTGCAATTTTGGGGGCCTCTGGGGGAATTGGTCAACCCGTTGCATTGCTGATGAAGATGAACCCTTTGGTTTCGGTTCTTCATCTTTATGATGTTGTCAACACCCCTGGTGTCACAGCTGATGTTAGTCACATGGACACTGGTGCAGTGGTTCGTGGCTTTCTGGGGCAGCCACAACTTGAGAGTGCACTAACTGGGATGGACTTGGTAATTATACCTGCTGGGGTGCCAAGGAAACCTGGGATGACAAGGGATGATTTATTCAAAATAAATGCTGGAATTGTGAGGACCCTTTGTGAAGGAATTGCCAAGTGTTGTCCCAATGCAATTGTCAACTTGATTAGCAATCCAGTGAACTCCACTGTTGCAATTGCTGCAGAGGTTTTCAAGAAAGCTGGTACGTATGATCCAAAGCGACTATTGGGTGTTACAACCCTCGATGTTGTGAGAGCAAATACTTTTGTGGCAGAGGTGCTTGGAGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTGGGAGGTCATGCTGGAGTCACAATTTTGCCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATCCAAAATGGTGGTACTGAAGTTGTTGAGGCAAAAGCTGGAGCTGGTTCAGCAACACTATCAATGGCTTATGCAGCTGCCAAGTTTGCTGATGCATGCCTCCATGGCTTGAAAGGAGAAGCTGGGGTAGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACAGAACTTCCCTTCTTTGCAACTAAGGTACGTCTTGGTCGATGTGGAGCAGAGGAGGTATATCAATTGGGTCCCCTGAATGAGTATGAAAGGATTGGGTTGGAAAAAGCAAAGAAAGAATTAGAAGGAAGCATCCAGAAGGGGATAGAGTTCATCAGAAAACAAGGGTGA 1077 0.4633 MEARAGANQRIARISAHLHPSNFQEGGDVVLKRDECRAKGGAPGFKVAILGASGGIGQPVALLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLHGLKGEAGVVECAFVDSQVTELPFFATKVRLGRCGAEEVYQLGPLNEYERIGLEKAKKELEGSIQKGIEFIRKQG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1930 358 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 356 - -
Apr3g1930 358 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Apr3g1930 358 SUPERFAMILY LDH C-terminal domain-like 189 355 IPR015955 GO:0003824|GO:0016616
Apr3g1930 358 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 2 356 - -
Apr3g1930 358 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 46 355 IPR010097 GO:0006099|GO:0030060
Apr3g1930 358 Gene3D - 37 189 - -
Apr3g1930 358 Gene3D - 190 358 IPR015955 GO:0003824|GO:0016616
Apr3g1930 358 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 353 IPR022383 GO:0016616
Apr3g1930 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Apr3g1930 358 ProSitePatterns Malate dehydrogenase active site signature. 189 201 IPR001252 GO:0006108|GO:0016615
Apr3g1930 358 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Apr3g1930 358 PIRSF Lac_mal_DH 44 356 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1930 Apr-Chr3 35307465 35310545 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1930 K00026 - gmx:100170735 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1930 3 35307465 35310545 Apr3g1930 3 35307465 35310545 ECH