Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1685 ATGGCACAGGCACTACCTGAAGAGAAGATCCATGAAAACCCAGAAAAGGATATCCAAGAAACAGGGAATTCTAGCTTCAAATTCAATGCCCAAGCGCCTGAATTTGTCCCAAGATCGCATACCCAGATGCAGATTTCGGGTTATTTCTATCCCTGCTTCCAGATTCTTGGCAGCTCTGGTGATTCTGAATGGTTCTATGTTGGGGACCAAGACCCTACTTGTTTGATCCCTGCTACAAATGTTGCGCTACCCAATTGCTCCAAGAATATCCTTACACCTGATCTTCAGCAAAAGATCGTTAAACAGGTGGAGTATCAGTTCAGTGATATGAGCTTGTTAGCAAATGAATCTTTCCAGAAACAGGTGAACAAAGACCCTGAAGGTTATGTTCCAATAACCGTAATTGCTTCCACCAAAAAGATTAAGTCTCTCGTTACTAACATTCCTCTGCTTACCCAATCTCTCCGTACCTCTTCAAAACTTGTTTTGAGTGCTGATGGCAAGAAGGTTAAACGTAAACACCCTTTTACTGAGAAAGACAGAGAGGAGTTGCAATCTCGTACTGTTGTGGCTGAGAATTTACCTGAGGATCATTCCCATCAAAATCTTCAGAAGATATTCACAACGGTTGGGAGCGTGAAAACAATCAGAATATGCCATCCCCCGGAATCTAATTCTTCTCGCCCAAAAAGTGATTTCTTCGTCAGTAACAAGGTACAGAAACAATGTCATACCATATTACTATGTTGTCTTAAGAAGTCAAATGATACTACGAGATTTTCTTACCCTTTGTTGCTTGCGTTGCGCCTCTTAATCAAGCTCCATGCACTCGTGGAGTATGAAACATCTGAAATAGCTGAGAAAGCTGTTGAGAAGTTGAATGATGAAAGGAATTGGAGGAAAGGGATGCGAGTAAGGCTGCTTCTTAGATGCTCGCCAAAATCTGTTCTGAAGAATAGGAAGTCGGAATTTGATGGCTATATAGATGACGATGAGGTTCTAAATTCTGAAACTGCTGAGGATTCTTCTCACTCAAACAATGCTGAATCATTTGAGACAAATGTTGATGAGAATTCAGGGGTGTCCAAGAAAGGATGGGCCAGAGGCCGTGGAAAGGGCAGAGGACGGATTCAAAGCCACACTGGACGTGGCTTGCTTGCTCCACCATCTCAATCAAGCAGCATTGCCCTGGGTGATGCATCTCCTAAAGCCAATACTAAGGGCCCAAGAATGCCAGATGGGACAAGAGGCTTCACCATGGGACGGGGCAAGCCAATCATTTCTCCTGCTCTAGTTAGTTCAGCTCAGGAGTAA 1314 0.4353 MAQALPEEKIHENPEKDIQETGNSSFKFNAQAPEFVPRSHTQMQISGYFYPCFQILGSSGDSEWFYVGDQDPTCLIPATNVALPNCSKNILTPDLQQKIVKQVEYQFSDMSLLANESFQKQVNKDPEGYVPITVIASTKKIKSLVTNIPLLTQSLRTSSKLVLSADGKKVKRKHPFTEKDREELQSRTVVAENLPEDHSHQNLQKIFTTVGSVKTIRICHPPESNSSRPKSDFFVSNKVQKQCHTILLCCLKKSNDTTRFSYPLLLALRLLIKLHALVEYETSEIAEKAVEKLNDERNWRKGMRVRLLLRCSPKSVLKNRKSEFDGYIDDDEVLNSETAEDSSHSNNAESFETNVDENSGVSKKGWARGRGKGRGRIQSHTGRGLLAPPSQSSSIALGDASPKANTKGPRMPDGTRGFTMGRGKPIISPALVSSAQE* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1685 437 Gene3D - 178 315 IPR012677 -
Apr3g1685 437 Gene3D - 92 177 IPR036388 -
Apr3g1685 437 Pfam Ataxin-2 C-terminal region 24 40 IPR009818 -
Apr3g1685 437 MobiDBLite consensus disorder prediction 336 437 - -
Apr3g1685 437 PANTHER LUPUS LA PROTEIN-RELATED 16 428 IPR045180 -
Apr3g1685 437 MobiDBLite consensus disorder prediction 384 400 - -
Apr3g1685 437 MobiDBLite consensus disorder prediction 339 360 - -
Apr3g1685 437 Pfam La domain 99 156 IPR006630 -
Apr3g1685 437 SUPERFAMILY RNA-binding domain, RBD 179 305 IPR035979 GO:0003676
Apr3g1685 437 CDD RRM_La_like_plant 187 309 IPR034878 GO:0003723
Apr3g1685 437 PRINTS Lupus La protein signature 128 143 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr3g1685 437 PRINTS Lupus La protein signature 181 197 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr3g1685 437 PRINTS Lupus La protein signature 102 119 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr3g1685 437 PRINTS Lupus La protein signature 159 172 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Apr3g1685 437 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g1685 437 SUPERFAMILY "Winged helix" DNA-binding domain 91 176 IPR036390 -
Apr3g1685 437 ProSiteProfiles La-type HTH domain profile. 89 180 IPR006630 -
Apr3g1685 437 PANTHER LA-RELATED PROTEIN 6C 16 428 - -
Apr3g1685 437 SMART la 93 173 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1685 Apr-Chr3 32462757 32465870 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1685 K15191 - gmx:100808205 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1685 3 32462757 32465870 Apr3g1685 3 32462757 32465870 ECH