Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1668 ATGGAGATCAAACCTGGTTTGTCAGCACTCATTACGGGTGGTGCCTCTGGAATCGGCAAAGGTCTTGCCCTGGCCCTTGCAGAGAAGGGTGTATTTATTACAATTGTTGATTTTGCTGAAGAAAGGGGAAGACAAGTTGCGAGCCTTGTTCAGAAAATTAACACCAAGTTTCATTCTAAGTTGGAATTTCCATCTGCCATGTTTGTGAAATGCGATGTGACTAATGCAAGAGATCTAGCTGCTGCATTTGAGAAGCACTTTTTGACATATGGAGGACTAGACATTTGTATTAACAGTGCTGGGATTGGTAATCCTATACCATTGCATAAGGATCAAACGGATGGCACTCATTCATGGAGACACACTGTTAATGTGAATTTGACTTCCGTTATAGATAGCACTCGCCTTGCGATTAAAACCATGGAAGCTGCCAAAAGGCCTGGTGTGATTATCAACATGGGTTCTGCTTCTGGTCTTTATCCAATGGTTGCTGATCCAATCTACAGTGGCTCTAAAGGTGGTGTCGTTATGTTTTCTAGAGCACTTCGTCTATACAAACGTCAAGGAATTCGAGTCAACGTGCTTTGCCCTGAGTTTGTTGAAACTGACATGGGCTTAATGATGGAATCCAATTTCATCAAGTTGGTAGGGGGCTTTGTACCTATGGAAATGGTGGTTAAAGGTGCTTTCGAGCTCATTATGGATGAAAGCAAAGCTGGCCATTGCCTATGGATTACAAATCGTCGGGGTATGGAGTACTGGCCTACCCCATCTGAAGAAGCAAAGTTCTTGATACGTTCCTCTCGTTTCAGGAAAAGATCCGATTTCCAAGCTCCTTCAATTAAACTTCCTGAGAGTTTTGAGAAAATGTTTGTTAAGACCTTGACTCACAACTTTCGGAATGCTACCAGCATAGTGAGAGCTCCACTGAGATTACCTGTCAAACCAAATCATGTTCTTGTTAAGATAATTTATGCTGGTGTGAATGCTAGTGATGTAAATTTTAGCTCAGGCCGCTATTTTGGTGGCAACAACAATGATACTGCTTCTCGTCTTCCATTTGATGCTGGATTTGAGGCCGTAGGAATAATTGCAGCAGTTGGGGATTCTGTCACTGACTTGAAAATTGGCATGCCTTGTGCAGTCATGACTTTTGGAGGCTATGCTGAATTCACAATGATTCCTTCAAAACATGCACTTCCAGTGCCTAGACCAGATCCCGAAGTTGTTGCCATGCTTACATCAGGATTAACTGCCTCAATCTCTCTAGAAAAGGCAGGACAGATGGAATCAGGAAAAGTGGTCCTTGTTACTGCTGCTGCCGGAGGAACTGGGCAATTTGCTGTTCAGCTAGCAAAATTAGCAGGAAATACCGTGGTTGCAACTTGTGGAGGTCCGGCAAAGGCCAAGCTTTTGAAAGAGCTGGGAGTTGACAGAGTCATAGATTATCATAGTGAAGATATAAAAACGGTTTTAAGGAAAGAATTCCCAAAAGGGATTGACATCATCTATGAGTCTGTCGGTGGTGACATGTTAAACTTGTGCTTGAATGCTTTGGCAGTCCATGGACGACTCATTGTTATTGGCATGATTTCTCAGTATCAAGGAGATAAGGGTTGGACGCCATCAAACTATCCTGGACTATGTGAGAAGCTCTTAGCGAAGAGCCAAACTGTGGCTGGCTTTTTCCTAGTGCAATATAGTCACATGTGGCAAGAACATCTTGACAGGCTATTTAATCTTCACTCAATGGGAAAGCTGAAGGTTGCTCTTGATCCAAAGAGATTTATAGGCCTGCATTCTGTTGCAGACGCTGTTGAGTATCTCCATTCAGGCAAAAGTGTTGGAAAGGTTGTTGTCTCCGTGGACCCAACCTTCCTTCATCCAGTGGCCAAATTGTGA 1902 0.4327 MEIKPGLSALITGGASGIGKGLALALAEKGVFITIVDFAEERGRQVASLVQKINTKFHSKLEFPSAMFVKCDVTNARDLAAAFEKHFLTYGGLDICINSAGIGNPIPLHKDQTDGTHSWRHTVNVNLTSVIDSTRLAIKTMEAAKRPGVIINMGSASGLYPMVADPIYSGSKGGVVMFSRALRLYKRQGIRVNVLCPEFVETDMGLMMESNFIKLVGGFVPMEMVVKGAFELIMDESKAGHCLWITNRRGMEYWPTPSEEAKFLIRSSRFRKRSDFQAPSIKLPESFEKMFVKTLTHNFRNATSIVRAPLRLPVKPNHVLVKIIYAGVNASDVNFSSGRYFGGNNNDTASRLPFDAGFEAVGIIAAVGDSVTDLKIGMPCAVMTFGGYAEFTMIPSKHALPVPRPDPEVVAMLTSGLTASISLEKAGQMESGKVVLVTAAAGGTGQFAVQLAKLAGNTVVATCGGPAKAKLLKELGVDRVIDYHSEDIKTVLRKEFPKGIDIIYESVGGDMLNLCLNALAVHGRLIVIGMISQYQGDKGWTPSNYPGLCEKLLAKSQTVAGFFLVQYSHMWQEHLDRLFNLHSMGKLKVALDPKRFIGLHSVADAVEYLHSGKSVGKVVVSVDPTFLHPVAKL* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1668 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 266 IPR036291 -
Apr3g1668 633 SUPERFAMILY GroES-like 297 436 IPR011032 -
Apr3g1668 633 CDD Mgc45594_like 286 610 - -
Apr3g1668 633 Gene3D - 411 589 - -
Apr3g1668 633 Pfam short chain dehydrogenase 9 205 IPR002347 -
Apr3g1668 633 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Apr3g1668 633 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Apr3g1668 633 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Apr3g1668 633 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Apr3g1668 633 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Apr3g1668 633 PANTHER BNAA08G02470D PROTEIN 99 628 - -
Apr3g1668 633 Pfam Zinc-binding dehydrogenase 443 577 IPR013149 -
Apr3g1668 633 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Apr3g1668 633 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Apr3g1668 633 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Apr3g1668 633 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Apr3g1668 633 SMART PKS_ER_names_mod 294 620 IPR020843 GO:0016491
Apr3g1668 633 Gene3D - 292 620 - -
Apr3g1668 633 Gene3D - 6 241 - -
Apr3g1668 633 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 99 628 - -
Apr3g1668 633 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 408 586 IPR036291 -
Apr3g1668 633 Pfam Alcohol dehydrogenase GroES-like domain 317 383 IPR013154 -
Apr3g1668 633 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 432 453 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1668 Apr-Chr3 32235502 32249714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1668 10 222 Acyl Lipid Metabolism Gene Families AT1G24360 31.308 1.11e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1668 - - gmx:100797559 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1668 3 32235502 32249714 Apr3g1668 3 32235502 32249714 ECH