Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1664 ATGGCGACGTTGCAATCGATTCAACGAGCACGAAAGACGATGCTCTCTTCCTCCTTCAAGCTTCGGACAAACGTTATCAATGCCACTCAAACTCTGACTACAAAGTCTCTAAGTACTTCTGCAATTCCACACGATTATCAGAGATTCCCTCCCCATTCCCAACAACACCAAACACCCTCTGATCCCACACCATTTCAGGGCCAATGGCAACAGCATCATCCTCAACATTTCAACCCACAAACCCCCCACCACAACCCTCCTCCTTCCAATCAATTCCCTTACCACAACCAACAGCCCCATAATAAACCCAATGTCCCTCGTTCATTTCCCGAGCAGGGGCCAAACCCTAATCACTGGAATCCTCGACACCCCACTTCTCAAAATCCCAACTTTCACACACCCGCTACCCCCAATCCTTCGTTCAATCAAAACCAGTGGAACCCTCGTACTCAGGGGTTCCCTACCCCACAACGTCCAAACCCTAACCAATTTCAAAACCCTAATAATACCCATTTCAACAATCAAGCTTCTGTCCAAGGGCAAGCTCCTCCTTCACCGCCCCCTTCAATCATTGATTTAACTAGCCTGTGCAAAGAGGGGAAAGCTAAAGAGGCAATTGAATTGATGGACAAAGGGGTCAAAGCTGATGCTATTTGCTTTGATCTTCTGTTTGATTTGTGTGGCCAATCCAAATCCCTAGAGGATGCCAAAAAGGCTCATGATTACTTTCTACAATCTACTTGTAGGAGTGATCTCAAGTTGAACAACAAGGTGATTGAGATGTATGGGAATTGTAAAAGCATGACTGATGCACGTAGGGTGTTTGATCATATGGCCAACAGGGATATGGATTCTTGGCACTTGATGATCCGCGGCTATGCAAATAATACCAACGGAGATGAGGCCTTGCAGTTGTTTGAGCAAATGAATGAGCTTGGTTTGGAAATCACTTCAGAGACTTTGCTAGCAGTGTTGTCAGCTTGTGCCAGTGCAGAGGCTGTGGAGGATGGTTACCTACATTTTGAGTCCATGAAAAGCAAGTATGGAATCGAGCCTAGGGTGGAGCACTATATGGGCCTTTTGGATGTTCTTGGACAATCTGGATATCTCAAGGAAGCTGAGGAGTTTGTTGCTAGGTTGCCCTTTGAGCACACAGTAACCGTATGGGAGACTCTGAAGCATTATGCTCGCATTCATGGAGACGTTGATCTTGAAGACCATGCTGAAGAGTTGATAATTAGTCTTGACCCATCAAAGGCTGTTGCCAATAAGATCCCTACGCCGCCTCCGAAGAAGTACTCTGCAATTAGCATGCTTGATGGCAGGAACAGAATTATTGAGTATAAGAATCCTACTCTGTACAAGGATGATGAAAAGTTGAAGGCCTTGAGTGGGATGAAAGAAGCGGGTTATGTTCCTGATACAAGATATGTTCTTCACGACATTGATCAGGAAGCAAAGGAGCAAGCCTTGCTATACCACAGTGAACGCTTGGCAATTGCCTATGGTCTTATTAGTACTCCTCCAAGAACACCGCTTAGAATCATCAAGAACCTTCGTGTCTGTGGTGATTGTCACAATGCCATCAAAATCATGTCCAGGATTGTAGGCAGGGAACTAATTGTCAGAGATAACAAAAGGTTTCATCATTTCAAGGATGGAAAATGCTCTTGTGGGGATTACTGGTGA 1689 0.4523 MATLQSIQRARKTMLSSSFKLRTNVINATQTLTTKSLSTSAIPHDYQRFPPHSQQHQTPSDPTPFQGQWQQHHPQHFNPQTPHHNPPPSNQFPYHNQQPHNKPNVPRSFPEQGPNPNHWNPRHPTSQNPNFHTPATPNPSFNQNQWNPRTQGFPTPQRPNPNQFQNPNNTHFNNQASVQGQAPPSPPPSIIDLTSLCKEGKAKEAIELMDKGVKADAICFDLLFDLCGQSKSLEDAKKAHDYFLQSTCRSDLKLNNKVIEMYGNCKSMTDARRVFDHMANRDMDSWHLMIRGYANNTNGDEALQLFEQMNELGLEITSETLLAVLSACASAEAVEDGYLHFESMKSKYGIEPRVEHYMGLLDVLGQSGYLKEAEEFVARLPFEHTVTVWETLKHYARIHGDVDLEDHAEELIISLDPSKAVANKIPTPPPKKYSAISMLDGRNRIIEYKNPTLYKDDEKLKALSGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPPRTPLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1664 562 Pfam DYW family of nucleic acid deaminases 470 562 IPR032867 GO:0008270
Apr3g1664 562 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 557 - -
Apr3g1664 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Apr3g1664 562 Gene3D Tetratricopeptide repeat domain 191 348 IPR011990 GO:0005515
Apr3g1664 562 MobiDBLite consensus disorder prediction 50 79 - -
Apr3g1664 562 Pfam PPR repeat 285 314 IPR002885 -
Apr3g1664 562 Pfam PPR repeat 194 211 IPR002885 -
Apr3g1664 562 TIGRFAM PPR: pentatricopeptide repeat domain 285 317 IPR002885 -
Apr3g1664 562 MobiDBLite consensus disorder prediction 111 180 - -
Apr3g1664 562 MobiDBLite consensus disorder prediction 36 189 - -
Apr3g1664 562 PANTHER OS07G0578800 PROTEIN-RELATED 3 557 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1664 Apr-Chr3 32192994 32195411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1664 207 562 Glycoside Hydrolase AT3G49170 36.434 6.54e-72 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1664 - - gmx:100795965 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1664 3 32192994 32195411 Apr3g1664 3 32192994 32195411 ECH