Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1456 ATGGCGCCCAAGGCAGAGAAGAAGCCCGCAGAGAAGAAACCCGCCGAGGAGAAGAAGTCGACGGTGGCGGAGAAGGCACCGCCGGCAGAGAAGAAGCCAAAGGCCGGGAAGAAGCTTCCTAAGGAAGGAGGTGCCGCGGGCGACAAGAAGAAGAAGAGAAACAAGAAGAGCATAGAGACATACAAGATCTACATCTTCAAGGTTCTCAAGCAAGTTCACCCAGACATTGGAATCTCCAGCAAGGCCATGGGTATAATGAACAGCTTCATCAACGACATATTCGAGAAGCTTGCCCAGGAAGCTTCTAGACTGGCTCGTTACAACAAGAAACCCACCATCACTTCAAGGGAAATTCAGACCGCGGTCAGGCTTGTGCTGCCCGGAGAATTGGCTAAGCATGCTGTCTCAGAGGGTACCAAAGCTGTTACCAAGTTCACTAGAGAGAAGAAGCCTGCGGAGAAGAAACCCGCCGAGGAGAAAAAGTCAACGGTGGCGGAGAAGGCGCCGCCTGCGGAGAAGAAGCCAAAGGCCGGGAAGAAGCTACCAAAGGAAGGAGGTGCCGCTGGCGACAAGAAGAAGAAGAGGAGCAAGAAGAGCATAGAGACATACAAGATCTACATCTTCAAGGTTCTCAAGCAGGTTCACCCTGACATTGGAATCTCCAGCAAGGCCATGGGTATAATGAACAGCTTCATAAACGACATATTCGAGAAGCTTGCCCAGGAGGCTTCTAGACTGGCTCGTTACAACAAGAAACCCACCATCACTTCGAGGGAAATTCAGACCGCGGTCAGGCTTGTGCTGCCCGGAGAATTGGCTAAGCATGCTGTCTCAGAGGGTACCAAAGCCGTTACCAAGTTCACTAGTTCTTGA 873 0.5166 MAPKAEKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGGAAGDKKKKRNKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTREKKPAEKKPAEEKKSTVAEKAPPAEKKPKAGKKLPKEGGAAGDKKKKRSKKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1456 290 SUPERFAMILY Histone-fold 41 148 IPR009072 GO:0046982
Apr3g1456 290 Pfam Core histone H2A/H2B/H3/H4 3 124 IPR007125 GO:0003677
Apr3g1456 290 Pfam Core histone H2A/H2B/H3/H4 149 266 IPR007125 GO:0003677
Apr3g1456 290 PRINTS Histone H2B signature 61 79 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 PRINTS Histone H2B signature 80 100 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 PRINTS Histone H2B signature 102 119 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 PRINTS Histone H2B signature 119 132 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 PRINTS Histone H2B signature 132 145 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 SMART h2b3 193 289 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 SMART h2b3 51 147 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 Gene3D Histone, subunit A 149 290 IPR009072 GO:0046982
Apr3g1456 290 Gene3D Histone, subunit A 2 148 IPR009072 GO:0046982
Apr3g1456 290 PANTHER HISTONE H2B 5 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 PANTHER HISTONE H2B 148 290 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 MobiDBLite consensus disorder prediction 142 195 - -
Apr3g1456 290 ProSitePatterns Histone H2B signature. 258 280 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1456 290 SUPERFAMILY Histone-fold 183 290 IPR009072 GO:0046982
Apr3g1456 290 PANTHER HISTONE H2B 148 290 - -
Apr3g1456 290 PANTHER HISTONE H2B 5 146 - -
Apr3g1456 290 MobiDBLite consensus disorder prediction 1 53 - -
Apr3g1456 290 MobiDBLite consensus disorder prediction 140 195 - -
Apr3g1456 290 ProSitePatterns Histone H2B signature. 116 138 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1456 Apr-Chr3 29211404 29220951 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1456 K11252 - gmx:100776374 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1456 3 29211404 29220951 Apr3g1456 3 29211404 29220951 ECH