Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1442 ATGGAGATTGATCTCTCACCCCAGTTGGCGAAGAAGGTGTACGATGGCAATGGTGGGTCTTATTATGCTTGGTCCCCTTCTGAGCTTCCCATGTTGCGTGAAGGGAACATTGGTGCTGCCAAGTTAGCTCTTGAAAAGAATGGTTTTGCCCTTCCTCGTTACTCTGACTCTTCCAAGGTTGCATACGTTTTGCAAGGAAGTGGAGTTGCTGGAATTGTGCTCCCTGAATCAGAAGAGAAAGTTGTTGCAATTAAAAAGGGTGATGCTTTGGCGCTCCCTTTTGGTGTGGTGACATGGTGGTGTAACAAGGAGGAAACTGAGTTGGTTGTTCTATTCCTCGGTGATACTTCAAAAGCTCACAAGGCTGGTGAATTTACAGACTTTTTTCTAACTGGTTCTAATGGAATCTTCACGGGATTTTCATCTGAGTTTGTGGGAAGAGCTTGGGACTTGGAAGAGAAGGATGTGAAGACCCTTGTTGAAAAACAATCAGGTAAGGGTATTGTGAAGCTTGATGGAACTATCGACCTTCCTCAGCCTAAAGAGGAACATAGGAAAGGCATGGCTTTGAACTGTGAAGAGGCTCCGTTAGATGTTGACATTAAGAATGGTGGAAGGGTTGTAGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTTGGAGCAGATCTTGTGAGGTTAGATGGAAAAGCCATGTGTTCTCCTGGATTCTCTTGTGACTCTGCATTGCAAGTTACTTACGTAGTAAAAGGGAGTGGTCGTGTTCAGGTTGTTGGTGTGGATGGTCGTAGGGTGTTGGAGACAACTCTGAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTTGTCTCAAAGATTGCAGACCCTGATGGAATGGAGTGGTTCTCTATCATCACTACCCCTAACCCTATATTTACACACCTGGCTGGAAGTTCTTCGGTGTGGAAGGCTCTATCACCTACGGTTCTGCAAGTTGCTTTCAATGTAGATGCAGGAGTAGAGCAACTCTTCCGTTCAAAGAGAACTGCTGATGCCATTTTCTTCCCACCTCCAAGTTAA 1071 0.4519 MEIDLSPQLAKKVYDGNGGSYYAWSPSELPMLREGNIGAAKLALEKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWCNKEETELVVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSSEFVGRAWDLEEKDVKTLVEKQSGKGIVKLDGTIDLPQPKEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGKAMCSPGFSCDSALQVTYVVKGSGRVQVVGVDGRRVLETTLKAGNLFIVPRFFVVSKIADPDGMEWFSIITTPNPIFTHLAGSSSVWKALSPTVLQVAFNVDAGVEQLFRSKRTADAIFFPPPS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1442 356 CDD cupin_11S_legumin_N 4 173 - -
Apr3g1442 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Apr3g1442 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Apr3g1442 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Apr3g1442 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Apr3g1442 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Apr3g1442 356 SMART Cupin_1_3 195 339 IPR006045 -
Apr3g1442 356 SMART Cupin_1_3 3 157 IPR006045 -
Apr3g1442 356 CDD cupin_11S_legumin_C 198 353 - -
Apr3g1442 356 PANTHER - 2 347 - -
Apr3g1442 356 Pfam Cupin 10 156 IPR006045 -
Apr3g1442 356 Pfam Cupin 199 335 IPR006045 -
Apr3g1442 356 Gene3D Jelly Rolls 3 195 IPR014710 -
Apr3g1442 356 Gene3D Jelly Rolls 196 356 IPR014710 -
Apr3g1442 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 347 - -
Apr3g1442 356 SUPERFAMILY RmlC-like cupins 13 345 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1442 Apr-Chr3 29116302 29118612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1442 35 333 Miscellaneous Gene Families AT2G18540 23.782 8.23e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1442 - - gmx:100782055 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1442 3 29116302 29118612 Apr3g1442 3 29116302 29118612 ECH
Apr2g2261 2 27713552 27715380 Apr3g1442 3 29116302 29118612 PCT