Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1421 ATGAATAGGGCGAGAACTGAAGGCATAACCTTCACGAAGGAACCATACATCGAGGATACAGGACCACGTAGAATACAGAATATGAAGTTCTGCACGTTATCAGAGTCGGAAATCGGCAAAATTGGTGAAGTTCAAGTGTGGAAGGGTGCTTACTATGATTCGTTTAAAAAGCCTATTCAAGGAGGCTTATTGGATCCCCGCATGGGCCCTGCTAATAAGAGTCTTTTCTGTGCGACATGCCATGGGAACTTTCAGGACTGTCCAGGGCACTATGGATACTTAAACCTTGCCCTTCCTGTTTTCAATGTTGGATACTTAAGTAACATTGTGGAAATACTGAAGTGCATTTGTAAGGGCTGTGCTCGTATTCTCCTTGATGAAGATACCCGTAAAAAATATTTGACAGAGATGAGAAGGCCCAAAAAAGCTGACGCAGATAAGATTGATTTTGTGAAAGTTCATGTAATGAAGGATTGTAGCAAAGTTGTGAATTGCCCAAGATGCGGATATATCAACGGTATAGTAAAGAAGGTTCCGTCTTCGCTAAGCATCATGCATGATTGCTCAAAATGTAAAAATGTTATTTCCGAGGAGCTTGAATCTGCACTCTCTCGTATAAAAGACTCTAGGGTGACAACCAATGTGTCTACTCGAATTCTTAACCCTTTCCAAGTTCTTTCCCTGTTTAGAAGGATGCATGATGAGGATTGTGAATTACTTCATGTTGCTGAAAAACCGGAGAAACTCATAATAACTAACATTATTGTGCCACCTATAGCCATTCGACCATCAGTTATAATGGATGGATCATTGAGCAATGAAAATGACATAACAGAGAGGCTAAAGAATATAATCCAAGCAAATGCTGTTCTTCGCCAGGAATTACAAGAATCCAGTGGTTCATCCAAATTTCTGGATGGTTGGGATATGCTTCAACTTGAAGTTGCTCAATTCATAAATAGTGATGTTCGTGGTGTACCATTCTATATGCAACCGTCCAAGCAACTGTCTGGTTTTGTTCAGCGCCTGAAAGGGAAGCAGGGACGTTTCCGTGGCAACTTATCTGGGAAACGTGTTGAATATACTGGAAGGACAGTTATTTCACCGGATCCTAATTTGAAGATTTCTGAGGTTGCAATACCCATCCATATGGCTCGTATATTGACTTACCCTGAGCGAGTTACGCATCACAATATGGAGAAGTTGAGACAATGTGTGAGAAATGGTCCTGATAAGTATCCTGGTGCAAGGATGCTTAGACGTGATGGAGGTCACTCATGGTCCTTACAAGTTCTTTCTAGGAAGCGTGCTGCAGATGAATTGAGGATTGGTGATATTGTTGATCGCCATTTGGAAGATGGAGACATTGTTCTTTTCAATAGACAGCCAAGCTTGCATCGGATGTCTATTATGTGTCACAGGGCAAGGATTATGCCTTGGAGAACTTTGAGATTCAATGAATCTGTATGTAACCCATATAATGCTGACTTTGATGGTGATGAGATGAACTTACATGTTCCACAGACTGAGGAGGCTCGAACAGAGGCTATTTTGTTGATGGGGGTGCAAAACAATTTGTGCACACCAAAAAATGGCGAAATTCTTGTTGCCTCTACTCAAGACTTTTTAACCTCTTCTTTTCTTATGACCAGGAAAGATACTTTTTATGATCGTTCTACCTTTTCACTTGTTTGCTCATACATGGGGGATGGCATGGATTTTGTTGACCTGCCAACTCCTGCAATTATTAAGCCTGTTGAGCTTTGGAGTGGTAAGCAGTTATTTAGCATTATCCTGCGCTCACATGCAAATGTGAGAGTCTATGTGAATCTTACTGTTAAGGAGAAGACATACAGCTCAAAGCTTGATGACAGGAAAAGAGAATTGAAAACAATGTGCCCAAATGATGGGTTTGTTTATTTTCGTAATAGTGAGTTGATCTCTGGACAACTTGGAAAGGTTACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTGTTACTAAGAGACTATAAAGCACATGCTGCTGCTTCTTGCATGAATCGTTTAGCTAAATTGAGTGCACGATGGATCGGAAATCATGGGTTCTCAATAGGCATTGATGATGTCCAACCAAAAGAGATACTGGTCAACAAGAAAGATGAAACAATTTCAGATGGTTATAGGAAATGTGATGGTTTTATAGAAGCATTCAATAAAGGAAAACTAGAACTCAAAGCTGGTTGTGATGCTGCTCAAACATTGGAAACTCTGATAACAGGGGTATTGAATGGAATACGTGATACAGCAGGGAAGGTTTGCATGCAAACCCTACACTGGAGAAATAGTCCATTGATCATGTCACAGTGTGGCTCCAAAGGATCACCTATTAATATTAGTCAAATGGTTGCCTGTGTTGGTCAACAGTCAGTGGGTGGTCGTCGTGCTCCTAATGGGTTTGTAGATCGAAGCCTTCCTCATTTCCCAAGAAAAGCTAAAACCCCTGCTGCTAAAGGATTTGTTGCTAATTCCTTTTACAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACAGCGGTTAAAACTGCAGACACTGGATACCTGTCTCGTCAAATAATGAAATCTCTAGAGGACTTGTTTGTAAATTATGATTGCTCTGTAAGAAATGCTGCTGGTGGTATTGTTCAATTTTGCTATGGAGATGATGGCATGGATCCAGCAGGCATGGAAGGGAAAAATGGAAAACCTTTAAATTTTGAGCGGTTGTTTTTGAGAAGCAAGGCCATATGCCCCAGCGATAGAGATGATGAAATTTTAACTTCCTCAGATGCATGTAAAGTAGTTCATGAGAAGCTTTCAGAAATTGGTATGTCTAGGTCAGTGGAGAAGGGGGTTTCAGAGGATGATATATTGTCAGAGGAGGTGGGATCCTCTGCTGACTTTGTTAATTCTCTGCTATCCTTTATAAAAAATAGTACAAAAATAACTGAAGAAACTTTTATCGAAGATATTTCTGAAGAGATGAAAAAATTTGGGCAGAGGATATCTGGGATCACCCGTAGACAACTGGAGGTTTTTGTGAATATCTGCCTATCTCGTTACCGTTCAAAAAAAATTGAGGCTGGAACTCCTTGTGGTGCAATTGGGGGTCATAGTATAGGGGAACCTGGGACCCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAATGTTACTCTTGGAGTTCCTCGTATCAAAGAAATAATTTGTGCAAGCAAAAAGATCAGTACACCAATTATCACTGCAATGCTTGAAAGTGATGATAATGCAAATACTGCAAGGATGGTAAAGGGTCGAATAGAAAAAACAAATTTAGGCCAGGTTGCAAAGAGTATAAAAGTTGTTATGAGTTCAAGGTTAGCTTCAGTTGTTATCACACTTGACATGGAACGAATCCAAGCTGCGCATCTAAATATAGATGCTAATATTGTAAAAGAATCTATTTTACAAACTAAAAAGACAAAATTGAAGCCAGAGCATATTAAGATTTTAGATATTAAAAAGCTTGAAGTTGTTCCCCAAGATGCGGATAAGAGTAAAGTCCATTTTCAGCTTCACTATCTCAAAAATTTACTTCCATCAGTTGTAGTAAAGGGAATTAAAACTGCAGAACGCATTGTTATCAGTAAAGAAGAAGATAAAGTGACGAAGGTCGAAAAGTTTAAATTACTGGTGGAAGGCACGGGCCTTCAAGATGTTATGGGAGTTGAAGGGGTTGATGGACGTAAAACTGTTAGTAATCATATCCATGAAGTACGAGACGTATTAGGAATTGAAGCTGCCAGAAAGTGTATCGTTGATGAGATCAATTTTACAATGGGAAGTCATGGAATGAGTATAGACATACGCCATATGATGCTTCTAGCCGATGTGATGACTGGCAGGGGTCAAGTCTTTGGAATAAATAGATTTGGAATATCAAAGATGGGTAAAAGTGTACTAATGCTCGCATCATTTGAGAGGACAGCAGATATTCTTTTCCAGGCATCGGTACATGGGAAGGACGATTTGATTGAAGGAGTAAGCGAATCCATAATCATGGGTATACCGATTCGGATAGGCACCGGAATGATCAAGGTCAAACAAAGGTTGGATCCGCCGGAGTTGCCTCGTGGAACCAGTCCTATTCTTCTATCTTGA 4203 0.4016 MNRARTEGITFTKEPYIEDTGPRRIQNMKFCTLSESEIGKIGEVQVWKGAYYDSFKKPIQGGLLDPRMGPANKSLFCATCHGNFQDCPGHYGYLNLALPVFNVGYLSNIVEILKCICKGCARILLDEDTRKKYLTEMRRPKKADADKIDFVKVHVMKDCSKVVNCPRCGYINGIVKKVPSSLSIMHDCSKCKNVISEELESALSRIKDSRVTTNVSTRILNPFQVLSLFRRMHDEDCELLHVAEKPEKLIITNIIVPPIAIRPSVIMDGSLSNENDITERLKNIIQANAVLRQELQESSGSSKFLDGWDMLQLEVAQFINSDVRGVPFYMQPSKQLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNMEKLRQCVRNGPDKYPGARMLRRDGGHSWSLQVLSRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSFLMTRKDTFYDRSTFSLVCSYMGDGMDFVDLPTPAIIKPVELWSGKQLFSIILRSHANVRVYVNLTVKEKTYSSKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILVNKKDETISDGYRKCDGFIEAFNKGKLELKAGCDAAQTLETLITGVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFVDRSLPHFPRKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYLSRQIMKSLEDLFVNYDCSVRNAAGGIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLRSKAICPSDRDDEILTSSDACKVVHEKLSEIGMSRSVEKGVSEDDILSEEVGSSADFVNSLLSFIKNSTKITEETFIEDISEEMKKFGQRISGITRRQLEVFVNICLSRYRSKKIEAGTPCGAIGGHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIICASKKISTPIITAMLESDDNANTARMVKGRIEKTNLGQVAKSIKVVMSSRLASVVITLDMERIQAAHLNIDANIVKESILQTKKTKLKPEHIKILDIKKLEVVPQDADKSKVHFQLHYLKNLLPSVVVKGIKTAERIVISKEEDKVTKVEKFKLLVEGTGLQDVMGVEGVDGRKTVSNHIHEVRDVLGIEAARKCIVDEINFTMGSHGMSIDIRHMMLLADVMTGRGQVFGINRFGISKMGKSVLMLASFERTADILFQASVHGKDDLIEGVSESIIMGIPIRIGTGMIKVKQRLDPPELPRGTSPILLS* 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1421 1400 Pfam RNA polymerase Rpb1, domain 5 842 1333 IPR007081 GO:0003677|GO:0003899|GO:0006351
Apr3g1421 1400 CDD RNAP_III_Rpc1_C 1037 1379 IPR035698 -
Apr3g1421 1400 Pfam RNA polymerase Rpb1, domain 2 356 522 IPR000722 GO:0003677|GO:0003899|GO:0006351
Apr3g1421 1400 Pfam RNA polymerase Rpb1, domain 4 730 835 IPR007083 GO:0003677|GO:0003899|GO:0006351
Apr3g1421 1400 Pfam RNA polymerase Rpb1, domain 3 525 704 IPR007066 GO:0003677|GO:0003899|GO:0006351
Apr3g1421 1400 Gene3D - 822 880 - -
Apr3g1421 1400 Gene3D - 881 932 - -
Apr3g1421 1400 Gene3D - 347 529 - -
Apr3g1421 1400 CDD RNAP_III_RPC1_N 33 892 IPR035697 -
Apr3g1421 1400 Gene3D RNA polymerase Rpb1, domain 3 530 703 IPR042102 -
Apr3g1421 1400 PANTHER DNA-DIRECTED RNA POLYMERASE 12 1385 IPR045867 GO:0003899|GO:0006351
Apr3g1421 1400 SMART rpolaneu7 247 550 IPR006592 GO:0003677|GO:0003899|GO:0006351
Apr3g1421 1400 Gene3D - 704 821 IPR038120 -
Apr3g1421 1400 Gene3D - 1331 1386 - -
Apr3g1421 1400 Gene3D RNA polymerase II, clamp domain 15 138 IPR044893 -
Apr3g1421 1400 Pfam RNA polymerase Rpb1, domain 1 23 354 IPR007080 GO:0003677|GO:0003899|GO:0006351
Apr3g1421 1400 Gene3D RNA polymerase ii 389 449 - -
Apr3g1421 1400 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 18 1384 - -
Apr3g1421 1400 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1 12 1385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1421 Apr-Chr3 28770046 28794234 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1421 K03018 - gmx:100811292 2428.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1421 3 28770046 28794234 Apr3g1421 3 28770046 28794234 ECH