Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1412 ATGATGATATATTTATGCTTACTTGATACGAGTGATTTGTGGTTTATCCTATTTTCATTCAGGGCAATCATGAGTGACGAAGGAGAAAGAACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAGCCTTGCAAATGCGGCTATGAGATCTGTGTCTGGTGCTGGCACCACATAATGAACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCTGCATGTCGCTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAATTAATATGGAGAAAAAGAAGACTCAGAAAGCAAAGTCTAAATCATCTGATGGACGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATTGTTGGATTGCCTCTCAATCTGGCAGATGAAGATCTTCTTCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGGACTGCATCTGGGTTCATTCAACAGTTTCCGAATGATACTTGTAGTGTATATATAACTTATTCTAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCTGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTTACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAACAAATCACCGGTGCCACAAACAATATGCAACGCCGATCGGGGAATGTATTACCTCCGCCAATGGATGATAGTACGAGTAATTCTTCTGCAAAGCCTATTTTGAAAAATGCTTCAAGTAACTCTGTTAGCACTGTAAGAGGTTCACCTCCGAATGGAATCTATGGGAAACATATTGCTCTACCGGCTAGTGCTGCATGGGGTACTCAGACTACAAATTGTCAGCCCCCTGCTGGAGGCCTATCATATGCAAATGGGCCATCCAAGCCAAAATATGATGCAGTCAGCAGCACACTAGCCTTTTCTGCAGCTGTTACAGGCTCAAATCAGGCTTCTGATGTTATAAAGAGGCCACCGTCGAGTGATGGGAGTCATAGTATAATACCTGGAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATACAACAATAGCATGGACAGTCTGGGTAGTGCAGGAGAAAAAACTTCATCTTCTGATGCTTCCCCTGTGCCTGTGAATTTGAACATTCAGTTGTCTTCTCTACCATTGTCCCGAGATAGTGATGGCAGTTGTACTACTGCAGACGCGATAAGTTCTACTAACATTACTGGACAGTCTTGTAATTCTGGTCCTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAAGTTGTCCACTGAATTGTCCTCAATTAACATTGATAAAAATGCTGAACATTATGGTATAACCAAACCTAGTAGCTCACCTACTGATTATGTCTTGATTAAATCACCTCAAATTCAAGGACCACAACATAATGTTGACAGATTTACAGATACAGTAACGGCAAATGTGGCTGGTAAAGCTACATCAGATAATGGGGTTTGTAACTCAAGGGAACAGTGTGATTGGAGATCGGATTCTCAATCTCTAGTAGTGTCAGACACTGCTGAAATTGATGACGATGTAACATCTTTTGATAATCAAAGACTGAAGGATCCAGAAGTTGTTTGCCGGTCTTATTTGCCAAAGTCAACCAGTTTCCTTCATGTATCAAACCAGTCAAACCCTTGTCTTCTGCAGCATGGTGAACCTTGTACTGCTATAAATGTAAATGCAAGTTCTCTATCTTTTGATGATCGAGTGCAGGATGAATCTATGTTACATGCATCTAAAGTAATATCTAATCGCTACCCTGAGAAATTTAGTGGTAGCTCTTATGGTTTACTTCATGATGAAAGAAATGGGAAAAGTATTGGGAGATTAGTTGGTGAAGCAGTTCATACTGGATGTGATGCTTCTATGGATAAGGGTGAAAGTAGTATCATTTCAAATATATTATCCATGGACTTTGATTCCTGGGATGACTCACTAACATCACCTCATAATTTAGCTAAGTTGTTGGGTGACAATGCTCATAACCAGTCTGGTCCTTTGAAAAAGTCTAGTTCTTGGAAAGTTCAAAGTAATAATCAATCAAGGTTCTCTTTTGCTAGGCAGGAGGAATCCAAATTCCACACCTTTGATGTACATGCACCTTATGGTGTCGGCCAGCAACAGCCAAACCATCCAGTCATTCAGAATTTTACAGAAAGAGACTTGTATATGGATAAGTTGGGTATTCCAAATGGCTATCCTACCAATAACTTTGAGGAAGCTGAAAATACTCATTCCATTGCATCTTCTAACAAGCTTTCTGCCATTTCAAGAGCACAAGTTTCAGCCCCGCCAGGATTTTCAGCTCCAAGCAGGCCACCGCCACCTGGTTTCTCTTCCCATGAGAGGGTGGAGCAGGCTTTTGACTCCGTTTCTGGGAATTCACTGGTTGACCACTCTTCTCTGCTGAGAAATTCATATCAGACACCCTCAGCTGGAAATATTGGTGGTGCAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCAGTCGGCAAGGGGAGACTTCAAGGTGCACTAAACAGCCCAGCACTGGACATGCGATCAAATTTCATGCCACAATTAAATTACTTTGAAAATGATGCCAGACTACAATTACTAATGCAAAGATCTCTCTCACCGCAGCAAAACCTTAGATTTCCTGAAATTGGGAATAATTTTTCTCAACTTGGTGATTCTTATGGTGTTTCTTCAAGGTTAGATCAATCACAAGTAAGTAATCTAGGTCCATTCCCACAGCTGTCTCTGCAGCCATCTGCAAATGCAGTCTTGTCAAATGGTCAATGGGATGGGTGGAATGAGATGCAAAGTGGGAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTTAATAAATTTTACTCAGGATATGATGATTCAAAATATCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTTGGGATGTGA 3132 0.4128 MMIYLCLLDTSDLWFILFSFRAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMNMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVNEINMEKKKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTASGFIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPMDDSTSNSSAKPILKNASSNSVSTVRGSPPNGIYGKHIALPASAAWGTQTTNCQPPAGGLSYANGPSKPKYDAVSSTLAFSAAVTGSNQASDVIKRPPSSDGSHSIIPGVKSELLKPVKQYNNSMDSLGSAGEKTSSSDASPVPVNLNIQLSSLPLSRDSDGSCTTADAISSTNITGQSCNSGPEEAMTATNEEIQKLSTELSSINIDKNAEHYGITKPSSSPTDYVLIKSPQIQGPQHNVDRFTDTVTANVAGKATSDNGVCNSREQCDWRSDSQSLVVSDTAEIDDDVTSFDNQRLKDPEVVCRSYLPKSTSFLHVSNQSNPCLLQHGEPCTAINVNASSLSFDDRVQDESMLHASKVISNRYPEKFSGSSYGLLHDERNGKSIGRLVGEAVHTGCDASMDKGESSIISNILSMDFDSWDDSLTSPHNLAKLLGDNAHNQSGPLKKSSSWKVQSNNQSRFSFARQEESKFHTFDVHAPYGVGQQQPNHPVIQNFTERDLYMDKLGIPNGYPTNNFEEAENTHSIASSNKLSAISRAQVSAPPGFSAPSRPPPPGFSSHERVEQAFDSVSGNSLVDHSSLLRNSYQTPSAGNIGGAGDIEFMDPAILAVGKGRLQGALNSPALDMRSNFMPQLNYFENDARLQLLMQRSLSPQQNLRFPEIGNNFSQLGDSYGVSSRLDQSQVSNLGPFPQLSLQPSANAVLSNGQWDGWNEMQSGNGLGVAELLRNERLGFNKFYSGYDDSKYRMPNSGDLYNRTFGM* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1412 1043 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 17 1043 IPR039780 GO:0004842|GO:0030014
Apr3g1412 1043 CDD mRING-HC-C4C4_CNOT4 32 81 IPR039515 -
Apr3g1412 1043 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 218 IPR000504 GO:0003723
Apr3g1412 1043 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 212 IPR000504 GO:0003723
Apr3g1412 1043 MobiDBLite consensus disorder prediction 282 308 - -
Apr3g1412 1043 SUPERFAMILY RNA-binding domain, RBD 126 212 IPR035979 GO:0003676
Apr3g1412 1043 SUPERFAMILY RING/U-box 23 89 - -
Apr3g1412 1043 Coils Coil 95 115 - -
Apr3g1412 1043 MobiDBLite consensus disorder prediction 822 843 - -
Apr3g1412 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 100 IPR013083 -
Apr3g1412 1043 Gene3D - 133 214 IPR012677 -
Apr3g1412 1043 CDD RRM_CNOT4 127 226 IPR034261 -
Apr3g1412 1043 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 17 1043 - -
Apr3g1412 1043 MobiDBLite consensus disorder prediction 407 470 - -
Apr3g1412 1043 ProSiteProfiles Zinc finger RING-type profile. 32 80 IPR001841 -
Apr3g1412 1043 Pfam RING/Ubox like zinc-binding domain 32 84 - -
Apr3g1412 1043 SMART rrm2_1 133 214 IPR003954 GO:0003676
Apr3g1412 1043 SMART rrm1_1 133 214 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1412 Apr-Chr3 28611995 28619764 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1412 K10643 - gmx:100801880 1727.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1412 3 28611995 28619764 Apr3g1412 3 28611995 28619764 ECH
Apr3g1412 3 28611995 28619764 Apr2g2237 2 27476148 27486278 PCT