Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1401 ATGAGAACAAGCAACCACTTGATTGGTGTACTAAACTTCTTAACGTTCCTGCTTTCGATTCCAATACTAGGAGGTGGGATATGGCTGAGCAGCAGAGCCAACAATACGGATTGTCTCAAGTTTCTTCAGTGGCCGTTGATCATAATAGGTGTCAGCATCATGGTCGTCTCTTTAGCGGGTTTTGCGGGGGCGTGTTACCGCAACACCTTCCTCATGCGACTCTACTTGGTGGTCATGTTTGTCATCATAGCGGTGCTTATTGGCTTCATAATATTCGCCTATGTGGTAACGGATAAAGGGTCGGGTCGAAGAGTGATGAACCGGGCTTACTTGGACTATTACCTGCAAGACTATTCGGGTTGGTTGGAGGAGCGCGTGGCGAGTGAGAGTTACTGGGGGAAGATTAGTTCTTGTATTCGGGACTCTAAAGTGTGTGCTAGAATGGGAAGAACCATTAATGGGGTGCCTGAAACTTCTGATATGTTCTACCTTAGACAACTCACTCCTGTTCAGTCTGGTTGCTGCAAGCCTCCCACAGATTGTGGCTATGTATATCAGAATGAGACAGTGTGGAACCTAGGATCAGGACTAATGGGAGCCAACCCAGATTGCACTAAGTGGAGCAATGACCAACAACTGCTTTGCTATGCCTGTGATTCTTGCAAGGCTGGTGTACTGGCTAGTCTCAGAAAGAGTTGGAGGAAGGTCTCAGTTATCAACATTGTTGTTATGATCATCCTTGTAATTGTTTACATAATTGCCTATGCAGCATATAGGAACAATCGTAGGATGGATAATGATGAACCCTATGGTGAAGCAAGGATGACAAAGGCACAACCTAGTGCCTTTCATCTTTAG 858 0.4569 MRTSNHLIGVLNFLTFLLSIPILGGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMFVIIAVLIGFIIFAYVVTDKGSGRRVMNRAYLDYYLQDYSGWLEERVASESYWGKISSCIRDSKVCARMGRTINGVPETSDMFYLRQLTPVQSGCCKPPTDCGYVYQNETVWNLGSGLMGANPDCTKWSNDQQLLCYACDSCKAGVLASLRKSWRKVSVINIVVMIILVIVYIIAYAAYRNNRRMDNDEPYGEARMTKAQPSAFHL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1401 285 Pfam Tetraspanin family 6 253 IPR018499 GO:0016021
Apr3g1401 285 PANTHER TETRASPANIN-8-RELATED 1 279 IPR044991 GO:0009734|GO:0016021
Apr3g1401 285 PANTHER TETRASPANIN-3-LIKE 1 279 - -
Apr3g1401 285 PRINTS Transmembrane four family signature 6 29 - -
Apr3g1401 285 PRINTS Transmembrane four family signature 39 65 - -
Apr3g1401 285 PRINTS Transmembrane four family signature 66 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1401 Apr-Chr3 28468133 28472220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1401 1 277 Miscellaneous Gene Families AT5G60220 73.646 1.34e-134 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1401 - - gmx:100798336 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1401 3 28468133 28472220 Apr3g1401 3 28468133 28472220 ECH