Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1388 ATGATGCATAGGATCAACACTGCAAGGTCCATTTTTTCAGCGGTTTTCAGAAGCAAGTCTTACCCTCACTCTGCTGCTGCTTTCTCCACCTCCTTGCTTTTCGATGAAACTCAGATACAGTTTAAAGAAAGTGTTGCTCAGTTTGCAACGGAAAATATTGCTCCTCATGCTTCAAAAATAGACCACACGAATTATTTCCCACAGGAGTTTAACCTATGGAAAAGCATGGGCGAATTTAATCTCCTTGGGATTACTGCACCAGAGGAATATGGAGGACTTGGCCTAGGTTACTTGTATCACTGTATAGCAATGGAAGAGATTAGCCGTGCTTCAGCATCTGTTGGTCTTTCTTATGGTGCTCATTCTAACCTGTGTATCAATCAGCTGGTGAGAAATGGAAGCCCTGCTCAGAAACTGAAATATTTGCCAAAGCTTATCTCAGGGGATCATGTGGGCGCTTTGGCAATGAGTGAGCCAAATTCTGGTTCTGATGTTGTCAGCATGAAATGCAAGGCTGATCGTGTAGATGGGGGCTACGTTCTTAATGGGAACAAGATGTGGTGTACTAATGGGCCAGTTGCTGAAACATTAGTTGTATATGCAAAAACAGACATAACTGCTGGGTCAAAAGGAATCTCTGCATTCATCATCGAGAAGGGAATGCCTGGATTCAGTACTGCCCAGAAATTGGATAAACTCGGGATGCGAGGAAGTGATACATGTGAGCTTGTCTTTGAGAATTGCTTTGTTCCAGAAGAAAATGTTCTTGGGAAAGAAGGGAAAGGAGTCTATGTCATGATGTCTGGGCTGGATCTGGAAAGACTTGTTTTGGCAGCTGGTCCTCTGGGTATTATGCAGGCATGCCTTGATGTTGTCCTTCCTTATGTTCGACAAAGAGAGCAGTTTGGTCGTCCCATTGGGGAGTTTCAGTTTATACAGGGGAAAATTGCTGACATATACACTTCTTTACAGTCCTCAAGGTCTTATGTATATTCTGTAGCCCGGGATTGTGACAATGGAAAAATTGATCCAAAGGATTGTGCTGGAGCTATACTTTGTGCAGCTGAAAGAGCAACCCAGGTTGCTTTGCAGGCTATACAATGTTTAGGTGGGAATGGCTATGTGAATGAGTATCCTACTGGTCGTCTCCTGAGAGATGCTAAGCTCTATGAGATTGGTGCTGGAACTAGTGAGATCAGAAGAATGATTATTGGTCGTGAGCTCTTCAAGGAGCAATGA 1239 0.4358 MMHRINTARSIFSAVFRSKSYPHSAAAFSTSLLFDETQIQFKESVAQFATENIAPHASKIDHTNYFPQEFNLWKSMGEFNLLGITAPEEYGGLGLGYLYHCIAMEEISRASASVGLSYGAHSNLCINQLVRNGSPAQKLKYLPKLISGDHVGALAMSEPNSGSDVVSMKCKADRVDGGYVLNGNKMWCTNGPVAETLVVYAKTDITAGSKGISAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGKEGKGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPIGEFQFIQGKIADIYTSLQSSRSYVYSVARDCDNGKIDPKDCAGAILCAAERATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLYEIGAGTSEIRRMIIGRELFKEQ* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1388 412 Pfam Acyl-CoA dehydrogenase, C-terminal domain 260 408 IPR009075 GO:0016627
Apr3g1388 412 Pfam Acyl-CoA dehydrogenase, middle domain 153 248 IPR006091 GO:0016627
Apr3g1388 412 PIRSF PIGM 161 412 - -
Apr3g1388 412 PIRSF PIGM 31 125 - -
Apr3g1388 412 ProSitePatterns Acyl-CoA dehydrogenases signature 1. 155 167 IPR006089 GO:0003995
Apr3g1388 412 SUPERFAMILY Acyl-CoA dehydrogenase C-terminal domain-like 258 410 IPR036250 GO:0016627
Apr3g1388 412 CDD IVD 34 410 IPR034183 GO:0003995
Apr3g1388 412 Pfam Acyl-CoA dehydrogenase, N-terminal domain 36 149 IPR013786 GO:0016627|GO:0050660
Apr3g1388 412 PANTHER 2-METHYLACYL-COA DEHYDROGENASE, MITOCHONDRIAL 2 412 - -
Apr3g1388 412 Gene3D - 152 264 IPR046373 GO:0016627
Apr3g1388 412 Gene3D - 26 150 IPR037069 GO:0016627|GO:0050660
Apr3g1388 412 ProSitePatterns Acyl-CoA dehydrogenases signature 2. 367 386 IPR006089 GO:0003995
Apr3g1388 412 PANTHER ACYL-COA DEHYDROGENASE 2 412 - -
Apr3g1388 412 Gene3D - 265 408 - -
Apr3g1388 412 SUPERFAMILY Acyl-CoA dehydrogenase NM domain-like 28 271 IPR009100 GO:0016627
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1388 Apr-Chr3 28346372 28352556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1388 2 412 Acyl Lipid Metabolism Gene Families AT3G45300 83.698 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1388 K00253 - gmx:100794259 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1388 3 28346372 28352556 Apr3g1388 3 28346372 28352556 ECH