Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1358 ATGTACAAGAACCAGCTTCAGGAGCTGGCACAGCGAAGCTGTTTCAACCTCCCTTCCTACACGTGCATTCGGGAAGGTCCCGATCACGCGCCGCGCTTCAAGGCCACCGTTAACTTTAACGGCGAGATCTTCGAGAGCCCTCACTATTGCTCCACTCTCCGTCAAGCAGAACACTCTGCGGCTGAGGTGGCACTCAATTCCCTCTCTCACCGTGCTCCCTCTCACTCCCTCGCCGCTAGAATCCTCGATGAAACGGGAGTATACAAGAACCTCTTGCAGGAAATTGCACAAAGGGTAGGGGCTCCATTGCCGCAGTACTTTACATTCAGGTCAGGCCTAGGACATTTACCTGTTTTTACTGGGACGGTAGAATTAGCTGGAATTATGTTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCAGAGAAAAATGCAGCTATGGCAGCTTGGTCCTCCCTAAAGCAATTGGCAAAAGAAACTGCAAGCTCCTCAAATGAGCCGGAGAACAACGACGAACTAGAACAGATCACTATAGCCCGGGCTTTACTGAACTACCGACTGAAGGAAAAAATGTCAATCTCAAATCCAAATGCTCCAATTCCATTTCCAAAGAAGTTTCAGATTCAAAATCCCAGGCCAACTAGCCCTCAGCCTCCACCTGCGGCAACATCAAAGATACTTCCCTTAATTTGCCAAAAGGCAGCACCTCGAAGCAGGCATTCAGCAGCAGCAGCAGCAGCTGCCAGTGACAATTCTGCAATGCCACCACATTCTTTTGCACCAGAAATCCGAGGGATCTGTCGCCCTAAGTTCCCCGCAGCAGGAGCAGCACCTTATGTCCCCATTCGACAAATGAGACCACCCTGCCAGGGGATTGCTCCTCCGGTGACTATAAGGACTGCAATACCTGTGTTCTCTCCACCTCCCCTACCACCACCAGCCGCTGCAGTGTCCCATCAAGTACTACGAGCTCCTCCTGTACGGGTTGCTCCTCCGGTCACAATACGACAAGCCGTTCCAGTATTTGCTGCTCCACCGGTCCCAAAAGATGAACCGGTTCCCATCCAAAGAGGCGACCCACCAACTGTGAGTGCCCCTAGCCTGGAAGACAAGCTACCGGCTAAAACTGAGGAGACCGAGGAGAGCAACAAGAGCGACAAGAGTCCACCGGAATCTGAGGCATTGCAGAGCATGGAGCAGCTGAAAATTTGA 1212 0.5157 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRAPSHSLAARILDETGVYKNLLQEIAQRVGAPLPQYFTFRSGLGHLPVFTGTVELAGIMFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSNEPENNDELEQITIARALLNYRLKEKMSISNPNAPIPFPKKFQIQNPRPTSPQPPPAATSKILPLICQKAAPRSRHSAAAAAAASDNSAMPPHSFAPEIRGICRPKFPAAGAAPYVPIRQMRPPCQGIAPPVTIRTAIPVFSPPPLPPPAAAVSHQVLRAPPVRVAPPVTIRQAVPVFAAPPVPKDEPVPIQRGDPPTVSAPSLEDKLPAKTEETEESNKSDKSPPESEALQSMEQLKI* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1358 403 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 403 - -
Apr3g1358 403 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Apr3g1358 403 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Apr3g1358 403 Gene3D - 84 155 - -
Apr3g1358 403 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Apr3g1358 403 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Apr3g1358 403 MobiDBLite consensus disorder prediction 344 403 - -
Apr3g1358 403 PANTHER - 1 403 - -
Apr3g1358 403 MobiDBLite consensus disorder prediction 196 223 - -
Apr3g1358 403 Gene3D - 2 83 - -
Apr3g1358 403 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Apr3g1358 403 MobiDBLite consensus disorder prediction 371 388 - -
Apr3g1358 403 SMART DRBM_3 2 69 IPR014720 -
Apr3g1358 403 SMART DRBM_3 88 154 IPR014720 -
Apr3g1358 403 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Apr3g1358 403 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Apr3g1358 403 SUPERFAMILY dsRNA-binding domain-like 88 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1358 Apr-Chr3 28099113 28102774 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1358 - - gmx:100816445 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1358 3 28099113 28102774 Apr3g1358 3 28099113 28102774 ECH
Apr2g2200 2 27192592 27197473 Apr3g1358 3 28099113 28102774 PCT