Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1320 ATGCCATTATCAATATCCTCTTTTCTCCATATGTTACTTCCTCTCCTCTCTCTTCTTGTACTCTCACTCATTATTTGTTCTAGTGCTCAGGGTCCACCTTCACCTGGCTACTACCCAAGTTCCAAAATTGGTCCTGTTAGCTTTGATCAAGGACTTAGAAACCTCTGGGGACCTCAGCATCAAAGACTAGACCAAGGCTCATTGACAATTTGGCTTGACTCTAACTCAGGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGATACTTTGGCGCTTCCATTAAGCTTCAACCTGGTTATACTGCGGGAGTAATCACGTCTTTCTACCTTTCAAACAACCAAGACCACCCGGGAAACCATGATGAAATTGACATTGAGTTCCTTGGTACTACCCCAAATAAGCCTTATGTCTTGCAGACAAATGTGTACATCAGAGGAAGTGGAGACGGAAACATTATAGGAAGAGAGTTGAGGTTTCATCTTTGGTTCGACCCAACACAGGATTTTCACAACTATGCCGTTTTATGGAAACCCAGCGAGATAATATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGATGCTACATACCCCTCAAGACCAATGTATGTGTATGGATCAATATGGGATGCATCTTCCTGGGCAACAGAGAATGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTAGGTACAAAAACTTCAAACTCCAAGGTTGCACCGCTGAAAGCCCTTCATCATGCCAGCCACCTTCTGTCTCATCATCTGGCTTTGGTAGTCTTAGCGCACCACAATTTGCAGCCATGCAATGGGTCCAAAATAACTACATGGTCTATAATTATTGCCATGACCCTAGGAGAGACCACACACATACCCCAGAGTGCTAG 909 0.4323 MPLSISSFLHMLLPLLSLLVLSLIICSSAQGPPSPGYYPSSKIGPVSFDQGLRNLWGPQHQRLDQGSLTIWLDSNSGSGFKSLHSYRSGYFGASIKLQPGYTAGVITSFYLSNNQDHPGNHDEIDIEFLGTTPNKPYVLQTNVYIRGSGDGNIIGRELRFHLWFDPTQDFHNYAVLWKPSEIIFFVDDVPIRRYPRKSDATYPSRPMYVYGSIWDASSWATENGKYKADYKYQPFIGRYKNFKLQGCTAESPSSCQPPSVSSSGFGSLSAPQFAAMQWVQNNYMVYNYCHDPRRDHTHTPEC* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1320 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 267 302 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Apr3g1320 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 16 302 IPR044791 GO:0004553
Apr3g1320 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
Apr3g1320 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 16 302 - -
Apr3g1320 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 48 302 IPR013320 -
Apr3g1320 302 PIRSF EndGlu_transf 7 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Apr3g1320 302 Pfam Glycosyl hydrolases family 16 52 231 IPR000757 GO:0004553|GO:0005975
Apr3g1320 302 Gene3D - 28 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1320 Apr-Chr3 27642125 27643947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1320 16 302 Glycoside Hydrolase AT3G44990 67.698 6.94e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1320 K08235 - gmx:100776165 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1320 3 27642125 27643947 Apr3g1320 3 27642125 27643947 ECH
Apr2g2167 2 26791775 26793439 Apr3g1320 3 27642125 27643947 PCT