Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1311 ATGCAACTCGCCACGGCGTCGCACACCCTGGTTTCACCGTCACCACTTCAGCCTAATTCACTTCTCCGATCATCCTTCTCCGGCGTCTCCGTCAAACTCTCTCCCCAATTCTTGACCCTTTCTCCCAATTCCAAACCGCTCACCGTCGTCGCCGCCACTAAGAAAGCCGTCGTCGTCCTCAAAGGTAACTCAGCCGTCGAAGGCGTCGCCACACTCATCCAAGAAGACGATGGCCCAACTACAGTAAGTGTTCGTGTTACTGGTCTTACTCCGGGGCTTCATGGTTTTCACCTTCATGAGTATGGTGACACCACGAATGGGTGTATATCAACGGGAGCACATTTTAATCCTAATAACCTGACACATGGTGCTCCTGAGGATGAAGTCCGTCATGCGGGTGACCTGGGAAACATAGTTGCTAATGCAGATGGGCTTGCAGAGGTTACAATCGTGGATAATCAGATACCGCTCTCTGGCCCCAATTCTGTAGTTGGAAGAGCCTTAGTGGTTCACGAGCTTGAGGATGACCTTGGAAAGGGTGGGCATGAACTTAGTTTGACAACTGGAAATGCTGGTGGAAGATTAGCATGTGGTGTGGTTGGTTTGACTCCAGTATAA 618 0.5065 MQLATASHTLVSPSPLQPNSLLRSSFSGVSVKLSPQFLTLSPNSKPLTVVAATKKAVVVLKGNSAVEGVATLIQEDDGPTTVSVRVTGLTPGLHGFHLHEYGDTTNGCISTGAHFNPNNLTHGAPEDEVRHAGDLGNIVANADGLAEVTIVDNQIPLSGPNSVVGRALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1311 205 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 51 203 IPR024134 -
Apr3g1311 205 PANTHER SUPEROXIDE DISMUTASE [CU-ZN] 51 203 - -
Apr3g1311 205 PRINTS Cu-Zn-superoxide dismutase family signature 95 117 IPR001424 GO:0006801|GO:0046872
Apr3g1311 205 PRINTS Cu-Zn-superoxide dismutase family signature 131 140 IPR001424 GO:0006801|GO:0046872
Apr3g1311 205 PRINTS Cu-Zn-superoxide dismutase family signature 150 172 IPR001424 GO:0006801|GO:0046872
Apr3g1311 205 PRINTS Cu-Zn-superoxide dismutase family signature 175 201 IPR001424 GO:0006801|GO:0046872
Apr3g1311 205 ProSitePatterns Copper/Zinc superoxide dismutase signature 2. 189 200 IPR018152 -
Apr3g1311 205 Pfam Copper/zinc superoxide dismutase (SODC) 66 200 IPR001424 GO:0006801|GO:0046872
Apr3g1311 205 Gene3D Superoxide dismutase, copper/zinc binding domain 50 204 IPR036423 GO:0006801|GO:0046872
Apr3g1311 205 CDD Cu-Zn_Superoxide_Dismutase 54 197 IPR001424 GO:0006801|GO:0046872
Apr3g1311 205 SUPERFAMILY Cu,Zn superoxide dismutase-like 55 202 IPR036423 GO:0006801|GO:0046872
Apr3g1311 205 ProSitePatterns Copper/Zinc superoxide dismutase signature 1. 95 105 IPR018152 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1311 Apr-Chr3 27570705 27574149 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1311 K04565 - gmx:100815376 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1311 3 27570705 27574149 Apr3g1311 3 27570705 27574149 ECH