Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1307 ATGGCACTCCCACACTCCCTCTCTGCCTTAACAACCACAGTCACACTTTCATCACCGAGAAGCAAACCGCAGAAACTGAATCCCTTCTTCCCAAAGACCCAGTTTTTGGCCAAAAAAACGAGACCCAGAAGCAGAAGAAACGTTTCCCTAACCCCTGCACGCGTTGCTGCGCCACCAACAACAATTGAACCCGATCAATCATTCCCAGAAACCGAAAAGGAGGAAATTGAGGACGAATTTAATGATGAGAGTTCTTCATCGAAATTCTCTTGGAGGGATCATTGGTACCCAGTTTCTCTAATAGAAGATCTGAACCCTCGCTTGCCAACACCTTTTCAGCTTTTGGGTCGTGAAATCGTGCTCTGGTACGATAATTCCAATTCCCAATGGGTTGCTTTTGATGATAAATGCCCTCATCGTCTTGCCCCTTTATCTGAAGGAAGGATTGATGAAGATGGGAAATTGCAATGTTCTTATCATGGATGGTCTTTTGATGGGTGTGGAACTTGTGTTAAGATTCCTCAGGCTTTGCCTGAAGGCCCTGAGGCACGTGCTGTTGGATCTCCTAAAGCGTGTGTCACTAGGTTCCCCACTATGGTGTCTCAGGGGTTGCTCTTTGTTTGGCCTGATGAGAATGGTTGGGAGAAAGCAAAAGCATCCAAACCTCCAACGTTGCCTGATGACTATGACAAACCAGAGTTTGCCACGGTTAACATTCAGCGTGATCTGTTCTACGGATATGATACTCTCATGGAGAATGTCTCTGACCCTTCTCATATTGAGTTTGCTCATCACAAGGTTACAGGACGGAGAGACAGAGCCAAGCCTCTACCATTCAAGATGGATTCACGTGGTTCATGGGGCTTTTCTGGAGCTAATGAAGGGAATCCACGGATCAGTGCCAAATTTGTTGCACCATGTTATTATATGAACAAGATTGAGATTGATACCAAACTCCCAATAGTTGGTGACCAGAAATGGGTAGTATGGATATGTTCCTTCAACGTCCCCATGGCACCTGGTAAAACTCGCTCGATTGTTTGCAGTGCTCGAAACTTCTTCCAGTTCACAGTGCCAGGGCCTGCCTGGTGGCAAGTTGTTCCTAGGTGGTATGAGCATTGGACTTCAAACAAGGTATATGATGGAGACATGATTGTCCTTCAAGGTCAAGAGAAAATCTTTCTTTCAGAAACCAAGGAAGGCGGCGATATTAACAAACAATACACAAACATCACCTTCACACCAACACAGGCTGACCGCTTTGTCTTGGCATTTCGAAATTGGCTGAGGCGACACGGCAACGGCCAACCAGAATGGTTTGGTAATAGCAGCAACCAGCAGTTGCCATCAACAGTTTTATCAAAACGCGAGATGTTGGATAGATTTGAACAACACACACTCAAGTGTTCATCATGTAAAGCAGCTTATGAGGGATTCCAAACATGGCAGAAAATCTTGATAGGTGCAACAGTTGTGTTTTGTGCAACATCAGGGATTCCATCAGATACTCAGCTACGTGTAATTCTGGCAGGACTTGCAGTTGTCAGCGCGGCCATAGCTTTAAAATTGAACCAACTCCAAAAGAATTTTGTATTTGTGGATTACGTGCATGCAGAAATTGATTAA 1626 0.4496 MALPHSLSALTTTVTLSSPRSKPQKLNPFFPKTQFLAKKTRPRSRRNVSLTPARVAAPPTTIEPDQSFPETEKEEIEDEFNDESSSSKFSWRDHWYPVSLIEDLNPRLPTPFQLLGREIVLWYDNSNSQWVAFDDKCPHRLAPLSEGRIDEDGKLQCSYHGWSFDGCGTCVKIPQALPEGPEARAVGSPKACVTRFPTMVSQGLLFVWPDENGWEKAKASKPPTLPDDYDKPEFATVNIQRDLFYGYDTLMENVSDPSHIEFAHHKVTGRRDRAKPLPFKMDSRGSWGFSGANEGNPRISAKFVAPCYYMNKIEIDTKLPIVGDQKWVVWICSFNVPMAPGKTRSIVCSARNFFQFTVPGPAWWQVVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSETKEGGDINKQYTNITFTPTQADRFVLAFRNWLRRHGNGQPEWFGNSSNQQLPSTVLSKREMLDRFEQHTLKCSSCKAAYEGFQTWQKILIGATVVFCATSGIPSDTQLRVILAGLAVVSAAIALKLNQLQKNFVFVDYVHAEID* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1307 541 Gene3D - 90 232 IPR036922 GO:0051537
Apr3g1307 541 Gene3D - 233 436 - -
Apr3g1307 541 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 95 207 IPR017941 GO:0051537
Apr3g1307 541 Pfam Rieske [2Fe-2S] domain 94 176 IPR017941 GO:0051537
Apr3g1307 541 CDD Rieske_RO_Alpha_PaO 83 217 - -
Apr3g1307 541 Pfam Pheophorbide a oxygenase 303 398 IPR013626 GO:0010277
Apr3g1307 541 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 11 541 - -
Apr3g1307 541 SUPERFAMILY Bet v1-like 202 436 - -
Apr3g1307 541 MobiDBLite consensus disorder prediction 1 28 - -
Apr3g1307 541 SUPERFAMILY ISP domain 88 213 IPR036922 GO:0051537
Apr3g1307 541 MobiDBLite consensus disorder prediction 1 87 - -
Apr3g1307 541 PANTHER PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC 11 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1307 Apr-Chr3 27539242 27543660 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1307 K13071 - gmx:778121 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1307 3 27539242 27543660 Apr3g1307 3 27539242 27543660 ECH