Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1301 ATGGCTCCAAAGCGTGCTGAGAAGGTGGTGGTTAAATCCACCAAGAAAGTTGTGGAATCAAGTGTACAAGTTTCTGTTGTGGGTAGTAACAGCCAAAGATTAACACGAGGCAACAAAGTAACTCAAAGAGAAGAAGAAGTAGGTGGTGTGAGGATCATTCCCATACAAGAAGTGACTCCTAATACCCAAAAGGATTCAAATGCCACAACTGAAACCAAAGCTGAGCAAGAAAACACTCAAAATGGTGTAGTCCAAAATCAAAAGGAAGAGCAAAAGAGAGACAATGAGGAAGTACTCAAAGAGCAACATGCTGATAAAGAGCAAGTAAAGAAGGGCAAGACTCAAAAAGGGCATAATGGTAAAGAGAAAAAGAGGAGAAAAAGAGGGAGAAGAAGAGAAGGGTACCAGAGGTATGTGTACAAAGTGTTGAAGCAAGTGCACCCTGAAATGGGAATTTCTTCAAAATGCATGACTATTTTGAATAACTTGATGAATGACATGTTTGAAAGGATTGCTTATGAGGCTGCAAAACTAAAGGACTACACAGGGCATATGACATTGTCTTCAAGGGAGATTCAAGGAGCAGTGAAGTTGGTTTTGCCAGGAGAGCTTGGGAAACATGCCATTGCTGAAGGTGTCAAAGCTGTGATCACCTACACCTCCCATGCATGA 672 0.4152 MAPKRAEKVVVKSTKKVVESSVQVSVVGSNSQRLTRGNKVTQREEEVGGVRIIPIQEVTPNTQKDSNATTETKAEQENTQNGVVQNQKEEQKRDNEEVLKEQHADKEQVKKGKTQKGHNGKEKKRRKRGRRREGYQRYVYKVLKQVHPEMGISSKCMTILNNLMNDMFERIAYEAAKLKDYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVITYTSHA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1301 223 PANTHER HISTONE H2B.2 1 221 - -
Apr3g1301 223 Coils Coil 81 106 - -
Apr3g1301 223 MobiDBLite consensus disorder prediction 26 134 - -
Apr3g1301 223 PRINTS Histone H2B signature 135 153 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 PRINTS Histone H2B signature 154 174 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 PRINTS Histone H2B signature 176 193 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 PRINTS Histone H2B signature 193 206 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 PRINTS Histone H2B signature 206 219 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 Pfam Core histone H2A/H2B/H3/H4 85 198 IPR007125 GO:0003677
Apr3g1301 223 SMART h2b3 123 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 Gene3D Histone, subunit A 96 222 IPR009072 GO:0046982
Apr3g1301 223 MobiDBLite consensus disorder prediction 87 115 - -
Apr3g1301 223 MobiDBLite consensus disorder prediction 116 134 - -
Apr3g1301 223 PANTHER HISTONE H2B 1 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Apr3g1301 223 MobiDBLite consensus disorder prediction 56 86 - -
Apr3g1301 223 SUPERFAMILY Histone-fold 107 221 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1301 Apr-Chr3 27504677 27505348 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1301 K11252 - gmx:100786873 234.572
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1301 3 27504677 27505348 Apr3g1301 3 27504677 27505348 ECH