Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1296 ATGGCTCCGATTCCGTCCGAGAACGGCGTCGAAGGAGACGATGAGAGAGAAGAGGAGGACGAAGAGGAAGAGGAAGAGGAAGAAGTAGAAGATGAAGAAGACGAAGAGGAACCAAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTTCTAGCCAGTGATGCAGCGTCGTGTATCGCGGTCGCCGAGCGGATGATCGCACTCGGCACCCAGGGCGGCACCGTTCACATCCTTGATTTTCTCGGAAATCAGGTGAAAGAATTCTCTGCGCATGCCGCTGTTGTTAACGACCTTAGCTTTGACATAGATGGTGAATATATTGGAAGCTGTTCTGATGATGGATCAGTTGTTATAAACAGCCTTTTCACTGATGAGACAATGAAGTTTGAGTACCATCGTCCGATGAAGGCAATTGCACTGGACCCAGATTATGTGAGGAAAATGTCTAGGAGATTTGTTGCTGGTGGTTTGGCAGGTCATTTATATTTAAATTCAAAGAAATGGTTTGGCTACCGTGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAGTGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGGGTGAAGGTTTACGATGCTGCCAATGACCAGCGTATAACATTTATTGAAAAACCACGAGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGTTTTGGCAGGATGACACGCTGTTGGTTATTGGCTGGGGAGCATCTGTCAAAATAGCTTCAATTAGGACAAATCACCATAAAGCAGCCAATGGGGCATACCGGCAAGTTCCCTTGTCTGGTATGACCCAGGTTGATATTGTGGCATCATTCCAAACCAGCTATTTCATCTCAGGACTTGCCCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGTGAAGAAGATGGAGATAAGGATTTTAGTAACTCTGCTCCTTCACGACAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACTGATGCTCTACCAGTACATGGGTTTGAGCATTACAAGGCAAAGGACTATTCTCTTGCTCATGCTCCCTTTTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCCCAAAGATGTAGTTATTGCAAAGCCAAGGGATACTGAAGATCATATTGCTTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAGTCTGGTCAGGGACGGAGTGAACTTCTTGATGAGGTGGGATCTAGGTACCTTGACCATCTAATTGTAGAAAGAAAATATGGTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTGCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTACGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGCTATTTATTCTGCATTACCTATAATTTCAGCCATTGAACCCCAGCTAAGTACTTCATCCGTGACCAATTCGCTTAAGGAGGCATTAGCAGAGTTGTATATAATCGATGGACAATATGAGAAAGCCTTCTCATTGTATGCAGATCTTATGAAGCCAGAAGTATTTGATTTCATTGATAAGCATAACCTACATGATGCAATTCGTGAGAAGGTTGTCCAATTGATGAGGCTAGATTGCAAGCGTGCAGCTCCTCTGTTTATTCAGAACAGGGACTCAATTAGTCCACCTGATGTTGTGAAGCAACTTCTAAATGCTAACGATAAGGGTGATTGCAGATATTTTTTACATTTATATCTCCATTCATTATTTGAAGTAAGTACACATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCGGACTATGATCCAAAGATGCTGCTACCTTTTCTTCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTATGAGATTTGCATTAAAAGAGACCTAATGAAGGAGCAAGTCTTCATCTTGGGAAGGATGGGAAACTCAAAACAAGCCCTAGCCATTATTATAAATAAATTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACGATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATACTATTGGAGCACACAGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAAGTTCCTAACGGGTTGGAAATACCTCGGCTTCGGGACCGGCTGGTTAAAATTATCACTGACTACAGGACAGAAACATCCCTCAGACATGGGTGCAATGATATCCTTAAGGCGGATTGTGTCAATCTTTTAATCAAGTATTACAAAGAGGCGAGGCATGGAATTTCTTTAGGTAATGAAGAAGATGAGCCATGGTTGAAAATGAGTGATGCTCGTGCTTCTCAGGTATTTGAGAAATCCGCAAGTCTGAGAACTATGGAGGTAAAGTCAAAGACTAAGGGAGGGGGAAGATGTTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCGTCTTACACTAGTAGTCGCAAGAAAGAGATTGAAGCCCCGTCCAAAGAGGCGGAAACGTATGATAGTTACAATGGTTATTTGGATGACGCTAGTGATGACGAAGAAACAGAGTTGGGTGGTCCTCGAATGCGTTGTATATTGTGTACTACGGCTACTAATTAA 2865 0.4346 MAPIPSENGVEGDDEREEEDEEEEEEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTQGGTVHILDFLGNQVKEFSAHAAVVNDLSFDIDGEYIGSCSDDGSVVINSLFTDETMKFEYHRPMKAIALDPDYVRKMSRRFVAGGLAGHLYLNSKKWFGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDAANDQRITFIEKPRGSPRPELLLPHLFWQDDTLLVIGWGASVKIASIRTNHHKAANGAYRQVPLSGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSNSAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSAIYSALPIISAIEPQLSTSSVTNSLKEALAELYIIDGQYEKAFSLYADLMKPEVFDFIDKHNLHDAIREKVVQLMRLDCKRAAPLFIQNRDSISPPDVVKQLLNANDKGDCRYFLHLYLHSLFEVSTHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMKEQVFILGRMGNSKQALAIIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGISLGNEEDEPWLKMSDARASQVFEKSASLRTMEVKSKTKGGGRCCICFDPFSIQNVSVIVFFCCHGYHTTCLMDSSYTSSRKKEIEAPSKEAETYDSYNGYLDDASDDEETELGGPRMRCILCTTATN* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1296 954 MobiDBLite consensus disorder prediction 1 40 - -
Apr3g1296 954 SUPERFAMILY WD40 repeat-like 55 246 IPR036322 GO:0005515
Apr3g1296 954 PIRSF Vps41 1 911 IPR016902 GO:0034058|GO:0046907
Apr3g1296 954 MobiDBLite consensus disorder prediction 11 36 - -
Apr3g1296 954 PANTHER VACUOLAR PROTEIN SORTING VPS41 1 953 IPR045111 GO:0006623
Apr3g1296 954 Gene3D Tetratricopeptide repeat domain 545 819 IPR011990 GO:0005515
Apr3g1296 954 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 609 756 IPR000547 GO:0006886|GO:0016192
Apr3g1296 954 SMART WD40_4 171 207 IPR001680 GO:0005515
Apr3g1296 954 SMART WD40_4 83 122 IPR001680 GO:0005515
Apr3g1296 954 SMART ring_2 870 949 IPR001841 -
Apr3g1296 954 SUPERFAMILY RING/U-box 869 907 - -
Apr3g1296 954 SMART CLH_2 609 756 IPR000547 GO:0006886|GO:0016192
Apr3g1296 954 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 1 953 - -
Apr3g1296 954 Gene3D - 7 279 IPR015943 GO:0005515
Apr3g1296 954 Coils Coil 12 36 - -
Apr3g1296 954 Pfam Region in Clathrin and VPS 610 752 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1296 Apr-Chr3 27440039 27450147 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1296 K20184 - gmx:100804340 1753.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1296 3 27440039 27450147 Apr3g1296 3 27440039 27450147 ECH