Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr3g1278 | ATGTGGGAGAAGCGTTCTCATCTGCACCTTCTCCGTTTCCGCTTATCAAACCACAAACTATCGCTTCCACGTCACGCCGTCACCGTCGCCGACGGACTCCAACACCCATCAGCGCCGGAAGGCGCCGCCATAGCCAAATTAGTCCTCGAATCGGACCCCCAATCCCTCTACCAAGCCCTAGCAAAGCCCACTCTCCACTGGACACCAGGCCTGGTGGACAAGGTCCTTAAACGCCTCTGGAACCACGGGCCCAAAGCCCTACAATTCTTCAAACACCTCGACCGCCACCCAACTTATGTCCACTCTTCTTCCGCCTTCCACCACGCCATCGACATCGCCGCCCGCATGCGCGAATACAATACTGCCTGGGCCTTCCTCGGCCGAATGCGCTCCCTCCGTCTCGGCCCAACTCCCCGAACCTTCGCCATCATCGCCGAGCGCTACGTCGCCGGAGGAAAAGCCCACCGCGCCGTGAAAGTCTTCTTATCCATGCACGAACACGGTTGCCGCCAAGATCTGAACTCGTTCAACACGTTGCTCGACGTTCTATGTAAATCGAAACGCGTGGAAATGGCTCACAACTTGTTCAACATTCTCAAACGCAAGTTCAAAGCCGATAGCGTAAGTTACAACATAATTGCGAATGGTTATTGTTTGATTAAGCGAACTCCAATGGCGTTGAAGGTGATGAAGGAAATGGTGGAGAGAGGAATTAACCCTACGATGGTTACGTATAACACGTTGTTGAAAGGGTATTTTAGGAGCAATCAGGTCAAGGAAGCTTGGGAATTCTATTTGGAGATGAAGAAGAGGAAGTGTGAAATTGATGTTGTGACTTACACTACAATGGTGCATGGGTTTGGTGTTGTGGGTGAGGTCAAGAAATCTCGTAGGGTTTTTGATGAGATGGTGAAAGAGGGTGTGGTTCCTTCGGTTGCCACGTATAATGCATTGATTCAGGTTTTGTGTAAGAAGGATAGTGTGGTGAATGCGGTGTTGGTTTTTGAGGAGATGGTGAAGAAGGGGTGCGAGCCTAATTTGATTAGTTACAATGTTGTTATACGAGGTTTCTGTCATGTTGGTGATATGGAGAGGGCGTTGGAGTTTATGGGGAGAATGGAGGAATGTGGGTTGTGGCCTAGTGTTCAGACTTATAATGTTGTGATTCGGTACTTTTGTGATGCTGGGGAGATTGAGAAGGGTTTGGAGATGTTTGCGAAGATGGGGAATGGGTCGTGTTTGCCTAATTTGGACACTTATAATGTTCTGATTAGTGCCATGTTTGTGAGGAAGAAATCAGAGGATGTAGTGGTGGCTGGGAAGTTATTGATAGAGATGATTGATAGAGGGTTCTTGCCGCGGAAGTTTATGTTTAATCAGGTTTTAAATGGACTTGTTCTAACTGGTAATCAAGATTTTGCAAAGGAGATATTGAGAATGCAGGGCAGGTGTGGCCGCGTTCTCCGGCATTTGAAGTTATGA | 1482 | 0.4845 | MWEKRSHLHLLRFRLSNHKLSLPRHAVTVADGLQHPSAPEGAAIAKLVLESDPQSLYQALAKPTLHWTPGLVDKVLKRLWNHGPKALQFFKHLDRHPTYVHSSSAFHHAIDIAARMREYNTAWAFLGRMRSLRLGPTPRTFAIIAERYVAGGKAHRAVKVFLSMHEHGCRQDLNSFNTLLDVLCKSKRVEMAHNLFNILKRKFKADSVSYNIIANGYCLIKRTPMALKVMKEMVERGINPTMVTYNTLLKGYFRSNQVKEAWEFYLEMKKRKCEIDVVTYTTMVHGFGVVGEVKKSRRVFDEMVKEGVVPSVATYNALIQVLCKKDSVVNAVLVFEEMVKKGCEPNLISYNVVIRGFCHVGDMERALEFMGRMEECGLWPSVQTYNVVIRYFCDAGEIEKGLEMFAKMGNGSCLPNLDTYNVLISAMFVRKKSEDVVVAGKLLIEMIDRGFLPRKFMFNQVLNGLVLTGNQDFAKEILRMQGRCGRVLRHLKL* | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr3g1278 | 493 | Gene3D | Tetratricopeptide repeat domain | 373 | 490 | IPR011990 | GO:0005515 | |
| Apr3g1278 | 493 | Gene3D | Tetratricopeptide repeat domain | 54 | 199 | IPR011990 | GO:0005515 | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | IPR002885 | - | |
| Apr3g1278 | 493 | Pfam | PPR repeat family | 380 | 427 | IPR002885 | - | |
| Apr3g1278 | 493 | Pfam | PPR repeat family | 172 | 218 | IPR002885 | - | |
| Apr3g1278 | 493 | Pfam | PPR repeat family | 240 | 287 | IPR002885 | - | |
| Apr3g1278 | 493 | Pfam | PPR repeat family | 310 | 359 | IPR002885 | - | |
| Apr3g1278 | 493 | PANTHER | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | 28 | 493 | - | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 314 | 346 | IPR002885 | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 348 | 378 | IPR002885 | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 175 | 198 | IPR002885 | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 384 | 416 | IPR002885 | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 278 | 312 | IPR002885 | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 243 | 277 | IPR002885 | - | |
| Apr3g1278 | 493 | TIGRFAM | PPR: pentatricopeptide repeat domain | 208 | 241 | IPR002885 | - | |
| Apr3g1278 | 493 | Gene3D | Tetratricopeptide repeat domain | 303 | 372 | IPR011990 | GO:0005515 | |
| Apr3g1278 | 493 | Gene3D | Tetratricopeptide repeat domain | 200 | 299 | IPR011990 | GO:0005515 | |
| Apr3g1278 | 493 | PANTHER | OS02G0679200 PROTEIN | 28 | 493 | - | - | |
| Apr3g1278 | 493 | SUPERFAMILY | HCP-like | 180 | 318 | - | - | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 206 | 240 | IPR002885 | - | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 241 | 275 | IPR002885 | - | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | IPR002885 | - | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 172 | 202 | IPR002885 | - | |
| Apr3g1278 | 493 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 381 | 415 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Apr3g1278 | 135 | 479 | Glycosyltransferase | AT1G05670 | 27.586 | 5.60e-45 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr3g1278 | - | - | gmx:100808784 | 760.755 |