Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1274 ATGTTTATGGTGGCAAGACCTTGTGGTTCTCCAGTGCGCGTTCATCAACTGCATCCTACGCCGCACCGTAGCAGAAACGTCGTCGTTCGATGCTCCTTGAGCAGCGTGAAGGAGATAGAAGAGAAGCGTGAATTAGATTCCGAGCTGCGCGTTTCGGTGGCATTTCCTCCGATAAGGGCGGCAAAGAGGGTGGTTCTGGTGAGGCACGGCCAGAGCACATGGAACGCCGAAGGGAGGATCCAAGGAAGTTCCAATTTCTCGGTTTTGACGAAGAAGGGCGAGTCTCAGGCTGAGACTTCGCGCCAAATGCTCATCGATGACCACTTCGATGCTTGCTTTTCGAGTCCTTTGGCTCGATCCAAGAGAACCGCTGAAATCATTTGGGGACCTCGCCAAGAACCCATCATTCCGGATTTTGATTTGAGGGAAATTGATTTGTACTCCTTTCAAGGTCTGTTGAAGCATGAGGGGAAAGCGAGATTTGGTTCTGCTTATCGCCAATGGCAGGTGGATGCGGCAAATTTCATCATTGATGGTCACTATCCAGTTAGAGAGTTGTGGGAGCGTGCTAAAAGCTGCTGGACTAAAATCTTAGCTCATGATAGCAGGTCTGTTCTTGTGGTTGCTCACAATGCTGTTAATCAGGCTCTTGTTGCCACAGCAATTGGTTTGGGGTCCGAGTATTTCAGAACTTTGCTTCAGAGCAATTGTGGTGTTAGTGTTCTGGATTTCATCCCAAGATCTGAGGGTGGCTCTCCACATATTTGCCTAAACCGCTTAAATCAGACTCCTGGTTCACCTATTGCTGGTGGGAAATCTAGTGGTAGAGATACAAAAAGGCGAATCATACTTGTTTGTAATGGATCCACACAAGGAAATATAGAGGACGGTTTTCCTTTTACTGGTGATCAACCGTTGAACATGCTTGGTGTCATACAGTCTCAGAAGTCTGCAGAGCTACTTCTTGATTTGAAAGTGAATTCCATAATTAGCAGTCCTAACAAAGCTTGTGTTGAGACTGCCGTGGCCATCTCTAAGGTGCAAGAAGCAGCAGATTGCCTGGGTGCTGACTGTGTGCCACGTTATGTTGAAATGAAGCAGATGGGGAACCTTGATATTGAAGCTATCTTCAAACAATCTGAAATGGATAAATCCAATTTTCCGCCATTTCAACCTGGGTGGTTAAATAGAGTTGATGGTGGACTGAGAACAGCATTATGGGATCAATCTGGAAAAGCTTGGAGATCCCTGTTAGATGAAATATCTGATGACTCTGGGTCAGAAGTTGTAGTTGCAGTTGGTCATGCTGCGATCCACATAGCATTAATGGGGCATTGCCTTAATTTGACGAAAGACTGGTTGGGATCATTTCATCTTGATGCAGGGAGCATTAGTGTCCTTGACTTCCCTGATGGACCTAAGGGCAGAGGTGTCGTCAGGTGCATAAATTATACTGCACATTTGGGGAGATGGTCCATCCCTATCACCAGATCAACAGAGGATGGTGAAGAGTTTTAA 1518 0.4638 MFMVARPCGSPVRVHQLHPTPHRSRNVVVRCSLSSVKEIEEKRELDSELRVSVAFPPIRAAKRVVLVRHGQSTWNAEGRIQGSSNFSVLTKKGESQAETSRQMLIDDHFDACFSSPLARSKRTAEIIWGPRQEPIIPDFDLREIDLYSFQGLLKHEGKARFGSAYRQWQVDAANFIIDGHYPVRELWERAKSCWTKILAHDSRSVLVVAHNAVNQALVATAIGLGSEYFRTLLQSNCGVSVLDFIPRSEGGSPHICLNRLNQTPGSPIAGGKSSGRDTKRRIILVCNGSTQGNIEDGFPFTGDQPLNMLGVIQSQKSAELLLDLKVNSIISSPNKACVETAVAISKVQEAADCLGADCVPRYVEMKQMGNLDIEAIFKQSEMDKSNFPPFQPGWLNRVDGGLRTALWDQSGKAWRSLLDEISDDSGSEVVVAVGHAAIHIALMGHCLNLTKDWLGSFHLDAGSISVLDFPDGPKGRGVVRCINYTAHLGRWSIPITRSTEDGEEF* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1274 505 Pfam Histidine phosphatase superfamily (branch 1) 282 472 IPR013078 -
Apr3g1274 505 Pfam Histidine phosphatase superfamily (branch 1) 64 245 IPR013078 -
Apr3g1274 505 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 35 247 - -
Apr3g1274 505 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 426 505 - -
Apr3g1274 505 SMART PGAM_5 281 442 IPR013078 -
Apr3g1274 505 SMART PGAM_5 63 217 IPR013078 -
Apr3g1274 505 SUPERFAMILY Phosphoglycerate mutase-like 62 258 IPR029033 -
Apr3g1274 505 CDD HP_PGM_like 281 480 IPR013078 -
Apr3g1274 505 CDD HP_PGM_like 63 244 IPR013078 -
Apr3g1274 505 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 66 75 IPR001345 GO:0003824
Apr3g1274 505 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 426 505 - -
Apr3g1274 505 PANTHER 2-CARBOXY-D-ARABINITOL-1-PHOSPHATASE-RELATED 35 247 - -
Apr3g1274 505 SUPERFAMILY Phosphoglycerate mutase-like 280 493 IPR029033 -
Apr3g1274 505 Gene3D - 62 249 IPR029033 -
Apr3g1274 505 Gene3D - 273 492 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1274 Apr-Chr3 27196816 27201533 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1274 K22200 - gmx:100798495 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1274 3 27196816 27201533 Apr3g1274 3 27196816 27201533 ECH