Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1247 ATGCCTAAGGTTTCCGAAGAAAAAGATGGATCTGAAATTGAAACCCTCAAACCCATCGATTCGTTTCCACATTTAGCGAATTGTTCCCTCAAGAATCCTTTCCCAATGAAACGCACCGTTCGCCCTCTCTTCGCTCTTCTCCTTCTCCTTGTCTTCGTCGCCACGCTCACCTCACGCGCCATGGTTCGCCGTGGCATTCTCTCCATCGAGCTCGAAACTCGCTTTCGCCTCCGAGATCCGCCGTCCCCGCCGCCGCTCAACGCCACGCTCCTCAAACACGCCGCCGTCGAAATCGGCGAGGAGAAGCTCCGGCTAGAGATTCAGCAGCTTCTCGACGGTAACTTCGGTAGCCACGCGCGCCACCGCACCTTCGTGTCGTGGCGGCGCTTCATCCACCATGACGACCGGAGTGTCACCGGCGCCAACGTTCACCTTCCGGCGACGCTCCGGTCACCGCTGTTCTACCGGTACTGGTTGGACTTCCGGAAGCTTCTCCACGATTGGGCTCGGAAGCGCCGATTCCAACCCGGGATCATGACCGAGTTGACTCGGTCAATAAAGGTACCAATTGATCAACATAACAAAGTGTTGTTGAGTCATGACAAAAAGTACTCTTCATGTGCTGTTGTTGGGAACAGTGGAATTTTGCTGAATAGGGATTATGGTAGTGTGATTGATGCACACGAGTTTGTTATAAGGTTGAACAATGCTAGGGTTGATCACTTTGAGAACAAGGTTGGGAAGAAAACTAGTGTTTCTTTTGTGAATAGTAACATTTTGCATTTGTGTGCAAGAAGAGCAGGGTGTTTTTGTCACCCTTATGGTGATCGTGTTCCAATTGTTATGTACATTTGCCAAGCTGTGCATTTCTTGGATTACACTGTGTGTAATGCTTCCCACAAGGCCCCATTGTTGGTTACTGATCCTAGGTTCGATGTGTTGTGTGCTAGGATTGTTAAGTACTATTCTTTGAAGAGGTTTGTGGAGGAGACGGGGAAGGGTTTGGACCAATGGGGTTCTGCCCATGATGGTGCTCTTTTCCATTACTCTTCTGGGATGCAAGCTGTGATGTTGGCTTTGGGAATTTGTGAGAAAGTTAGCATTTTTGGGTTTGGGAAATCAGCTTCTGCTAAGCATCATTATCACACTAACCAGAAAGCTGAGCTTCATTTGCATGATTATGAGGCTGAATATGCGTTTTACCGTGACCTTGTTGATGGATACAAGCCTATCCCATTTCTCTCTGATAAGTTCAAGATTCCTCCTGTTAAGATGTATCAATGA 1284 0.4829 MPKVSEEKDGSEIETLKPIDSFPHLANCSLKNPFPMKRTVRPLFALLLLLVFVATLTSRAMVRRGILSIELETRFRLRDPPSPPPLNATLLKHAAVEIGEEKLRLEIQQLLDGNFGSHARHRTFVSWRRFIHHDDRSVTGANVHLPATLRSPLFYRYWLDFRKLLHDWARKRRFQPGIMTELTRSIKVPIDQHNKVLLSHDKKYSSCAVVGNSGILLNRDYGSVIDAHEFVIRLNNARVDHFENKVGKKTSVSFVNSNILHLCARRAGCFCHPYGDRVPIVMYICQAVHFLDYTVCNASHKAPLLVTDPRFDVLCARIVKYYSLKRFVEETGKGLDQWGSAHDGALFHYSSGMQAVMLALGICEKVSIFGFGKSASAKHHYHTNQKAELHLHDYEAEYAFYRDLVDGYKPIPFLSDKFKIPPVKMYQ* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1247 427 Pfam Glycosyltransferase family 29 (sialyltransferase) 193 406 IPR001675 GO:0006486|GO:0008373
Apr3g1247 427 PANTHER BETA-1,6-GALACTOSYLTRANSFERASE GALT29A 35 427 - -
Apr3g1247 427 PANTHER BETA-1,6-GALACTOSYLTRANSFERASE GALT29A 35 427 - -
Apr3g1247 427 Gene3D Glycosyl transferase family 29 153 409 IPR038578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1247 Apr-Chr3 26942935 26945130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1247 172 371 Glycosyltransferase AT3G48820 23.301 1.12e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1247 K00786 - gmx:100816284 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1247 3 26942935 26945130 Apr3g1247 3 26942935 26945130 ECH