Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1246 ATGAAGGTTCATGAAACGAGGTCACATGTTCATGCACCTGGGGAGGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCAGAGTCCAAGGCACATGAGGTGGAGCATTCTCCTAAGAAGGCCAAGGTGGAGAAGGAGGACGGTCACACCAATGGAAAATCTGAAATTGATATTGCGGAAGAATATGATGAGTTCTGTAAAGCCACAAATGAGCACCTTCCTTTGGAACAAATGAGAGAAATTCTAGAGGCTAATGAAATTGATTCTTCTGGTTCTGATCTTGAAATTACACGAAGATGCCAAGACTTGCTGTTTTATGGTGCATTGGACAAATGCTCGGTTTGCAATGGGAGTTTGGAGTTTGATGGCAGACGTTATGTTTGTAGAGGGTTCTACAGTGAGTGGGCTAGTTGCACTTTCAGCACAAGAAACCCCCCAAGGAAACAAGATCCTATTAAGTTACCTGATTCAGTCCAGAACTCCCTGGTTTCAGATTTGCTAAAGAAATATCAGGACCCAAGTAGTAGGCTTCACATGGATTTAGGCTCAGCTGAAAAACCTTTTACAGGAATGATGATATCTTTGATGGGTCGTCTTAATCGGACACATCATTATTGGAAAACAACTATTGAAAAGCATGGAGGGAAGGTCGCAAACTCTATAATTGGGGCAACTTGTTTGGTGGCTTCACCTGCTGAGCGAGAACGTGGCGGCACATCCAAACTTGCAGAAGCCATGGAGCGGGGTATACCAGTTGTTAGGGAAGCTTGGTTGATTGAAAGCATTGAAAAGCAAGAACCACAGCCGTTGGAAGCCTATGATCTTGTCTCTGATCTTTCTGTGGATGGCAAGGGAATCCCCTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAACGGAACTCAAGCTTTATGGAAAGAGAGGGGTATACAAAGACACCAAGTTGCAGGAAAAGGGAGGAAAGATATTTGAAAAAGATGGACTATTGTACAACTGTGCCTTCTCTATTTGTGACCAAGGACGAGGACTGAATGACTACTGTGTCATGCAACTGATTCAAGTCCCAGATAATCGTTTGCATCTGTACTTTAAGAAAGGGAGAGTTGGAGATGATCCAAATGCAGAAGAACGGTTAGAAGAGTGGGACAATGTGGACAGTGCTCTGAAAGAATTTGTGAAGCTCTTCGAGGAAATAACAGGAAATGAATTTGAACCTTGGGAAAAAGAGAAGGAGTTCCAGAAGAAGCCCTTGAAGTTTTATCCCATTGACATGGATGATGGAGTGGAAGTTAGACATGGGGCACTGGGTCTTCGGCAGCTGGGGATAGCAGTAACACACTGCAAACTTCAGCCTCTGGTAGCGAATTTTATGAAGGTTTTGTGTAGCCAAGAGATATATAAGTATGCTTTGATGGAGATGGGATATGACTCTCCGGATCTTCCAATAGGAATGGTTACAAATCTTCACTTGGAAAGATGTGAGGAAGTTCTCTTAGAATTCATAGACAAGGTGAAATCATTGAAAGAAACTGGGCCAAAGGCTGAGGCTGTTTGGACAGATTTTAGCCAAAGATGGTTCACTCTTATGCACTCCACAAGGCCCTTCAACTTTCGAGATTATCAGGAGATTGCAGATCATGCTGCTGCTGCATTGGAGAGTGTAAGAGACATAAACCTGGCTTCTCACCTCATAGGAGATATGAGTGGTTCCACCATTGATGACCCATTATCAGGAACACACAAGAAATTGGGTTGCTCAATTTCTCCCTTGGACAAAAATTCAAATGATTACGGGATGATTGTGAAATACCTTGAAAAAACTTATGAACCTGTCAAAGGTGACATTGATTACGGGGTGTCTGTGGAAAACATTTTTGCTGTGGAACCGAGTGCATGCCCTTCCTATGACGAAATAGTAAAGCTGCCAAATAAGGTTCTTCTATGGTGTGGATCGCGAAGCTCAAATCTTTTGAGGCACTTGCACAAGGGGTTCTTGCCAGCAATATGCTCACTCCCAGTTCCGGGTTACATGTTTGGCAAAGCTATTGTTTGTTCCGATGCTGCAGCAGAGGCCGCAAGATATGGTTTCACAGCTGTGGACAGGCCAGAAGGGTTCTTGGTTTTGGCCATTGCGTCACTAGGAAATGAGATCACCGAGTTGAAAAGCCCACCTGAGGACACGTCATCTTTGGAGGAAAAGAAGCTTGGAGTAAAGGGATTAGGGAAGAAGAAAACAGATGAATCAGAGCATTTTGTTTGGAAAGATGACATAAAAGTTCCTTCTGGTAAACTAGTTGCCTCAGATCATCAAGATAGCCCCCTGGAGTACAATGAGTATGCTGTCTATGATCCTAAGCAGGTACGCATAAGCTACTTGGTGGGAGTGAAGTATGAAGAGAAGGGCGTGGTGGTGGACACAGCTGAGTGA 2436 0.4405 MKVHETRSHVHAPGEEEKVMTRKQKAESKAHEVEHSPKKAKVEKEDGHTNGKSEIDIAEEYDEFCKATNEHLPLEQMREILEANEIDSSGSDLEITRRCQDLLFYGALDKCSVCNGSLEFDGRRYVCRGFYSEWASCTFSTRNPPRKQDPIKLPDSVQNSLVSDLLKKYQDPSSRLHMDLGSAEKPFTGMMISLMGRLNRTHHYWKTTIEKHGGKVANSIIGATCLVASPAERERGGTSKLAEAMERGIPVVREAWLIESIEKQEPQPLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSTELKLYGKRGVYKDTKLQEKGGKIFEKDGLLYNCAFSICDQGRGLNDYCVMQLIQVPDNRLHLYFKKGRVGDDPNAEERLEEWDNVDSALKEFVKLFEEITGNEFEPWEKEKEFQKKPLKFYPIDMDDGVEVRHGALGLRQLGIAVTHCKLQPLVANFMKVLCSQEIYKYALMEMGYDSPDLPIGMVTNLHLERCEEVLLEFIDKVKSLKETGPKAEAVWTDFSQRWFTLMHSTRPFNFRDYQEIADHAAAALESVRDINLASHLIGDMSGSTIDDPLSGTHKKLGCSISPLDKNSNDYGMIVKYLEKTYEPVKGDIDYGVSVENIFAVEPSACPSYDEIVKLPNKVLLWCGSRSSNLLRHLHKGFLPAICSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAIASLGNEITELKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPSGKLVASDHQDSPLEYNEYAVYDPKQVRISYLVGVKYEEKGVVVDTAE* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1246 811 ProSiteProfiles BRCT domain profile. 182 274 IPR001357 -
Apr3g1246 811 SMART BRCT_7 184 264 IPR001357 -
Apr3g1246 811 Gene3D - 445 584 IPR036616 GO:0003950
Apr3g1246 811 Pfam WGR domain 333 412 IPR008893 -
Apr3g1246 811 MobiDBLite consensus disorder prediction 1 51 - -
Apr3g1246 811 Pfam PADR1 (NUC008) domain 97 147 IPR012982 -
Apr3g1246 811 SMART PADR1_2 95 148 IPR012982 -
Apr3g1246 811 ProSiteProfiles PARP catalytic domain profile. 577 807 IPR012317 GO:0003950
Apr3g1246 811 SMART WGR_cls 333 416 IPR008893 -
Apr3g1246 811 CDD parp_like 449 799 - -
Apr3g1246 811 SUPERFAMILY BRCT domain 184 285 IPR036420 -
Apr3g1246 811 Gene3D BRCT domain 181 280 IPR036420 -
Apr3g1246 811 Gene3D - 587 802 - -
Apr3g1246 811 ProSiteProfiles WGR domain profile. 322 422 IPR008893 -
Apr3g1246 811 Pfam BRCA1 C Terminus (BRCT) domain 184 261 IPR001357 -
Apr3g1246 811 Pfam Poly(ADP-ribose) polymerase catalytic domain 597 799 IPR012317 GO:0003950
Apr3g1246 811 Gene3D - 55 176 - -
Apr3g1246 811 CDD WGR_PARP1_like 323 429 - -
Apr3g1246 811 SUPERFAMILY ADP-ribosylation 586 802 - -
Apr3g1246 811 Coils Coil 493 513 - -
Apr3g1246 811 CDD BRCT_PARP1 187 262 - -
Apr3g1246 811 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 449 582 IPR036616 GO:0003950
Apr3g1246 811 Pfam Poly(ADP-ribose) polymerase, regulatory domain 450 579 IPR004102 GO:0003950
Apr3g1246 811 PANTHER DNA LIGASE 1 803 - -
Apr3g1246 811 ProSiteProfiles PARP alpha-helical domain profile. 449 568 IPR004102 GO:0003950
Apr3g1246 811 SUPERFAMILY WGR domain-like 298 427 IPR036930 -
Apr3g1246 811 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1246 Apr-Chr3 26937526 26941974 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1246 K10798 - gmx:100788978 1510.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1246 3 26937526 26941974 Apr3g1246 3 26937526 26941974 ECH