Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1224 ATGGCGATCCTCTACGCTTTGGTGGCCAGAGGTACGGTGGTGCTGGCGGAGTTCAGCGCCGTCACCGGCAACACAGGCGCCGTCGCCCGCCGTATCCTCGAGAAGCTTCCGGCAGAGTCTGATTCTAGGCTTTGCTTCTCTCAGGATCGCTACATCTTTCACATTCTCCGATCCGATGGCATCACCTACCTCTGTATGGCCAACGACACCTTTGGAAGGAGAATCCCTTTTTCATACTTGGAAGATGTCCAAATGAGATTTATGAAGAACTATGGTAGAGTTGTCAATTATGCACCAGCTTATGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTTTCTAGTAATCCTAGTGTCGATACCCTCAATCGTGTCAGGGGTGAAGTTGGTGAGATACGTACAATCATGGTGGACAATATCGAGAAAATATTGGAGAGAGGTGACCGGATTGAACTTCTTGTTGACAAGACAGCAACAATGCAAGACAGTGCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCTTGCATCACTCTACCATCCTGCAGGTCCTAATTGCAACTCCTGCTGGTTTATGTATTTTCTGA 633 0.4597 MAILYALVARGTVVLAEFSAVTGNTGAVARRILEKLPAESDSRLCFSQDRYIFHILRSDGITYLCMANDTFGRRIPFSYLEDVQMRFMKNYGRVVNYAPAYAMNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNFKLLHHSTILQVLIATPAGLCIF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1224 210 PANTHER SNARE PROTEINS 1 200 - -
Apr3g1224 210 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Apr3g1224 210 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN 711-RELATED 1 200 - -
Apr3g1224 210 CDD R-SNARE 125 184 - -
Apr3g1224 210 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016021|GO:0016192
Apr3g1224 210 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Apr3g1224 210 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Apr3g1224 210 Gene3D - 123 190 - -
Apr3g1224 210 CDD Longin 4 118 IPR010908 -
Apr3g1224 210 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016021|GO:0016192
Apr3g1224 210 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016021|GO:0016192
Apr3g1224 210 SMART Longin_2 28 110 IPR010908 -
Apr3g1224 210 Pfam Synaptobrevin 124 200 IPR042855 -
Apr3g1224 210 Gene3D Longin domain 1 122 - -
Apr3g1224 210 SUPERFAMILY SNARE fusion complex 121 188 - -
Apr3g1224 210 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1224 Apr-Chr3 26755952 26760146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1224 1 201 Miscellaneous Gene Families AT5G22360 84.653 6.73e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1224 K08515 - gmx:100808089 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1224 3 26755952 26760146 Apr3g1224 3 26755952 26760146 ECH